Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi218g00070 ATGGAACAACCGCAGCCGGAAACAGCTGTGAGCCTTGGAACTCCCGAGTTGGCCGCGGCGGAGCTTTTGAGCCGCGGTGTTAGGGATTTGGAGGAGTCGCGCCTCGTCGGAGTTCCTGTAGCGCTCGCTTGCGATGTTGACATGGCAGAGAGAGAAGGTGGTTGCTGCGCGCCCAATTTGGAGGTCGCCGTCGTGGACGGCGCTATTTTGAAGAGGAAGCGGGGTCGTCCAGCGAAAGGAACTCCGAAAACGACTCCTCCGCCGAGGCAGAAGAAGGACGAGGAGGATGTTTGTTTCATATGCTTCGACGGCGGGAGCCTCGTTCTCTGCGATCGCCGGGGTTGCCCCAAAGCGTATCATCCCTCATGTATTAAGCGAGACGAGGAGTTCTTCCGATCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCACTTGTCAGAGGGCATCCCATTACATGTGCTACACTTGTACGTTTTCTTTGTGCAAGGGATGTACAAAAGATGCTGATTTTGTTTTAATCAGAGGAAATAAAGGTTTGTGTGGAATATGCATGAGAACTATAATGCTGATTGAGAACAGTGCCCAGGGAAATAAGGAAATGTGTGATGTGGATTTCGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTGTCTTTAACGTTTGATGAACTCCTTAGAGCTAAAAACCCATTTAATGGTGCTGCTCCTATGAGCTGTAAAGTTCAAACTCCCCATGAACTTTATCATCTAAAAGATGACAAAGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAGTATAAGAGACAGCCAAAGCTTCTTAGTAAAGGGGATTGCTTTGATAGGATAACTTCTGCTGGTGACACTGGTGTGTCTTTGCCTGAATGCATGAAATGGGCATCAAAGGAACTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAGTCTCCTGCAGGATTATGTAAAGAAAAATAATCTCCGTGATCCTGAACAGAAGTCCCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCACGTGTTGGCTACATTGAAATGCTAATGCTCCTTGAACCTCACTTTCTCATAAAATATAATAGCCGTGCAGAAAATGCTTTTGGAGCTGGAATTATTGATGCTGTTGCTAATGAGGGGGAGGCAATTGACAATTACAATAAACAGTTGATGTCAGTTAATGATAAGAGATGTATAACAAGTAAAAAGGCCGATGTGCTAGTGCCACAAAATAATCCAGATGCATATGCTGCTATAAATGCTCACAACATTAACTTGATCTACTTACGGCGAAGTCTGATGGAAAGTTTAATGGATGATACTGAAAAGATTGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGATATGTACAGGCTTGTCCAAGTTGTAGGTACAAACAAGGTTGCTGAACCTTACAAAATTGGCACAAGCACAACTGATATTAAGCTTGAAATTTTGAACTTAAACAGGAAGGAGGTCATATCCATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGACGAATGCAAGCGTTTGCGTCAGAGTATAAAGTATGGGCTCTCAAAGAGACTGACTGTGGGAGAGATTCTGGACAAAGCATTGACACTTCAAGCAATTAGAGCTAATGATTTGTCCAGAAAATGCTTGCCTCATGGTAACCATGATTATGTATGTGCAGCTGGTAATATAAGGTCAAAATATCCTGGATTTGATAGAAGAGAGATGGAACCTATTTTCTCCAGAATATGGGATGGTGTGTTGAATGATGTTGGATGCAGAACACAAGACTTGACCACTACCCGTGATCCAATTGCGAATACATGTACAGTGAAAAATCATATCAACCATAATGATACAGCTATTGATGATAGCACTAATGTAGTTAAGAAATCAGAAGCATCTAGTGTTGCAGTGGGTATTTCATCATCTCCTCTCTCTATGGGGATTGAGCAGCCATTTAATGATTACATGAATGATAAATCATGGCATTATCAGGATCCAACTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGAAAGTGGACATTTCCCTCCAGATCTCAGAATATGGAGGATGGATGAGAAACAAGATAACTCTACATTGTTATCTGATGCACTAAATGGGAAGTGTTCCAAAAATGTGACATTGCCATCCAACAGCCAATTGCTGTCTTTAGGGCCCAGTGTTACATTGGATAATAAAGAAAGCAGTCAGGATGGTGGGAGGAATGCAATAAGGAATGAAATTTGTGCAGACAGCCAAATCATCGAGCAGAACAGGGAACAAAAAGTGGATGATACTTCTAACCAGTCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGAATGACCAGCTGCATGTATACCCTTTGCTACCACAAACTGCCTTTTCTGAGAAATTAAATGAGAATCCTTCTGATAAGTTAAGGGAGGGTCATGGGATTGAGGGAAACTCTAAAGATAATGGAAATTATGGCTCGAACAGGACTTCTGATGGTCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGATAGTGAAGACAATTCAGGGCAATCTTCTGGACAGAACTGGATACGCTCTAATGTAAATATAAATATAAATATAAATAGTCCTTCCAATTGTTTGGTTACCCCACCAGCTCATGTTTCTGAGACAAAAGCATCACCACTTAGGCTAGGTTTTGATTTGCATAATCCCCCTTCCCCTCCAGTGTGTAATACTACATGGCAGGCAATCATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTGGTGAGGAATTGACTGGCGGTTCTAAAAATGTTTGTCTCAGTTTTGCAGAGCTTAGCCCAATGCTTGATGCAGGTAATCAATGGGAGTCAGGCTCAGAAAATTCTATTGTTCCATCCACTGTAACATTGGGCATGGCTATAGACACCACTTGGAGACTTGGGTCGGAGAATACACACTTGGGATGGGGTGGAATGGATCAACGAAATACAAATATGGGTTGGGGAGTAGGACAGACAGCAGTGCCTGAGAACAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGCTTTGGGGACAGCCAAACAAGATATTCCAGTGATCGATTTTCAGTGCCCAGAGATCGGGGATTTCCTGGTCATGGTAGGGAATCAAATTTTAGTAGAGGCAGAACTGCATGGAACAGGCAACCATTGTTTGGTGCTGGAAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTTGCACCCATGA 3543 0.4245 MEQPQPETAVSLGTPELAAAELLSRGVRDLEESRLVGVPVALACDVDMAEREGGCCAPNLEVAVVDGAILKRKRGRPAKGTPKTTPPPRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEEFFRSKAKWNCGWHICSTCQRASHYMCYTCTFSLCKGCTKDADFVLIRGNKGLCGICMRTIMLIENSAQGNKEMCDVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPFNGAAPMSCKVQTPHELYHLKDDKGSGSENSCIDIESNNLKNKKYKRQPKLLSKGDCFDRITSAGDTGVSLPECMKWASKELLEFVAHMKNGDTSLLSQFDVQSLLQDYVKKNNLRDPEQKSQIVCDSRLVNLFGKARVGYIEMLMLLEPHFLIKYNSRAENAFGAGIIDAVANEGEAIDNYNKQLMSVNDKRCITSKKADVLVPQNNPDAYAAINAHNINLIYLRRSLMESLMDDTEKIEKVVGSFVRIRISSGDQKQDMYRLVQVVGTNKVAEPYKIGTSTTDIKLEILNLNRKEVISIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILDKALTLQAIRANDLSRKCLPHGNHDYVCAAGNIRSKYPGFDRREMEPIFSRIWDGVLNDVGCRTQDLTTTRDPIANTCTVKNHINHNDTAIDDSTNVVKKSEASSVAVGISSSPLSMGIEQPFNDYMNDKSWHYQDPTGKVQGPFSMLQLYKWNESGHFPPDLRIWRMDEKQDNSTLLSDALNGKCSKNVTLPSNSQLLSLGPSVTLDNKESSQDGGRNAIRNEICADSQIIEQNREQKVDDTSNQSNGKDESVRSNGWNDQLHVYPLLPQTAFSEKLNENPSDKLREGHGIEGNSKDNGNYGSNRTSDGQSNSGQSYQKQSDSEDNSGQSSGQNWIRSNVNINININSPSNCLVTPPAHVSETKASPLRLGFDLHNPPSPPVCNTTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRGEELTGGSKNVCLSFAELSPMLDAGNQWESGSENSIVPSTVTLGMAIDTTWRLGSENTHLGWGGMDQRNTNMGWGVGQTAVPENRSSNSYTSVVTPGFGDSQTRYSSDRFSVPRDRGFPGHGRESNFSRGRTAWNRQPLFGAGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYLHP 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi218g00070 1180 CDD SWIB-MDM2_like 318 393 - -
Sebi218g00070 1180 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 62 590 - -
Sebi218g00070 1180 SUPERFAMILY SWIB/MDM2 domain 317 394 IPR036885 -
Sebi218g00070 1180 SMART gyf_5 706 761 IPR003169 GO:0005515
Sebi218g00070 1180 FunFam Zinc finger CCCH domain-containing protein 19 88 187 - -
Sebi218g00070 1180 FunFam Zinc finger CCCH domain-containing protein 19 456 584 - -
Sebi218g00070 1180 SUPERFAMILY CCCH zinc finger 1155 1179 IPR036855 GO:0046872
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 1084 1132 - -
Sebi218g00070 1180 SUPERFAMILY FYVE/PHD zinc finger 92 142 IPR011011 -
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 857 911 - -
Sebi218g00070 1180 Pfam SWIB/MDM2 domain 320 393 IPR003121 -
Sebi218g00070 1180 ProSitePatterns Zinc finger PHD-type signature. 98 158 IPR019786 -
Sebi218g00070 1180 ProSiteProfiles Zinc finger PHD-type profile. 95 161 IPR019787 -
Sebi218g00070 1180 ProSiteProfiles Zinc finger C3H1-type profile. 1155 1180 IPR000571 GO:0046872
Sebi218g00070 1180 CDD GYF 705 760 IPR003169 GO:0005515
Sebi218g00070 1180 SMART rtf1 455 564 IPR004343 GO:0003677
Sebi218g00070 1180 Gene3D SWIB/MDM2 domain 311 402 IPR036885 -
Sebi218g00070 1180 Pfam Plus-3 domain 460 562 IPR004343 GO:0003677
Sebi218g00070 1180 SMART swib_2 312 398 IPR019835 -
Sebi218g00070 1180 SMART PHD_3 97 143 IPR001965 -
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 873 911 - -
Sebi218g00070 1180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 186 IPR013083 -
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 1084 1111 - -
Sebi218g00070 1180 SUPERFAMILY Plus3-like 456 583 IPR036128 GO:0003677
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 778 795 - -
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 811 835 - -
Sebi218g00070 1180 MobiDBLite consensus disorder prediction 778 799 - -
Sebi218g00070 1180 Gene3D - 456 584 IPR036128 GO:0003677
Sebi218g00070 1180 ProSiteProfiles GYF domain profile. 705 759 IPR003169 GO:0005515
Sebi218g00070 1180 ProSiteProfiles SWIB/MDM2 domain profile. 312 395 IPR003121 -
Sebi218g00070 1180 CDD PHD5_NSD 97 142 - -
Sebi218g00070 1180 Pfam GYF domain 708 748 IPR003169 GO:0005515
Sebi218g00070 1180 Gene3D - 707 763 IPR035445 -
Sebi218g00070 1180 ProSiteProfiles Plus3 domain profile. 455 587 IPR004343 GO:0003677
Sebi218g00070 1180 SUPERFAMILY GYF domain 701 758 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi218g00070 Sebi-Chr218 792006 798102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi218g00070 95 166 PHD Transcription Factor Family AT5G36670 37.838 2.95e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Sebi218g00070 Plus-3 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi218g00070 - - vum:124834891 1141.72