Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi218g00056 ATGTCTGCCGCCGGAGAAGGTGATGCTCCCGCCGTCGAAAAGCCGGTGGAGGAGGTGAAAGCGCCGGAGGAGCCTAAGCCTGTGAAGGAGAAGAAGCCTAAGGCTCCAAAAGAGAAGAAGCCCAAACAACCTAAGGCCAAAACCGCTTCACATCCTCCATATTTTCAGATGATCAAGGAGGCCTTGTTGGCTCTGAACGAGAAGGGAGGTTCGAGCCCTTATGCCATCGCCAAGTACATGGAGGAGAAGCACAAGTCGGTGCTACCTGCGAATTTCAAGAAGATCCTTGGCTTGCAGCTGAAGAATCAAGCAGCAAGAGGGAAGCTGGTGAAGGTTAAGGCTTCGTATAAGCTATCTGAAGCCGCGAAGAAGGAGAAAAAGGATAGTACTGCTGCTAAGGCTGCGAAGGCCAACACAGAGAAGCAGCCACAGCGTCCAAAACGTACCAGAGCCGTAACCGCCACTGCTCCGAAGAGCAAAAAAAGTGAGGCTCCTAAGAAGGCCGGGAAAAAGAAGACGAAGAAGGTGTCTACTTTGCCTGCGAAGCCCAAACAGCCCAAGTCCATCAAGTCTCCTTCTAAGAGGGCTAGGAAAGCTACTGCTGCTACTGCGTGA 615 0.522 MSAAGEGDAPAVEKPVEEVKAPEEPKPVKEKKPKAPKEKKPKQPKAKTASHPPYFQMIKEALLALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAARGKLVKVKASYKLSEAAKKEKKDSTAAKAAKANTEKQPQRPKRTRAVTATAPKSKKSEAPKKAGKKKTKKVSTLPAKPKQPKSIKSPSKRARKATAATA 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi218g00056 204 FunFam Histone H1 46 139 - -
Sebi218g00056 204 PANTHER HISTONE H1 26 198 - -
Sebi218g00056 204 Pfam linker histone H1 and H5 family 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi218g00056 204 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi218g00056 204 SUPERFAMILY "Winged helix" DNA-binding domain 47 130 IPR036390 -
Sebi218g00056 204 MobiDBLite consensus disorder prediction 1 53 - -
Sebi218g00056 204 MobiDBLite consensus disorder prediction 164 178 - -
Sebi218g00056 204 MobiDBLite consensus disorder prediction 119 147 - -
Sebi218g00056 204 Gene3D - 45 131 IPR036388 -
Sebi218g00056 204 PRINTS Histone H5 signature 64 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi218g00056 204 PRINTS Histone H5 signature 135 149 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi218g00056 204 PRINTS Histone H5 signature 37 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi218g00056 204 PRINTS Histone H5 signature 165 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi218g00056 204 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi218g00056 204 CDD H15 48 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi218g00056 204 MobiDBLite consensus disorder prediction 119 204 - -
Sebi218g00056 204 MobiDBLite consensus disorder prediction 11 34 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi218g00056 44 118 Single Myb Histone (SMH) Gene Family AT1G72740 37.333 1.67e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi218g00056 K11275 - gmx:100500169 160.999