Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi218g00054 ATGTCCCCTGTTTCTTCGGTAGCTGCAAAGGGACCAGAATTACAGATTCAAGGGAAGGGAGGAGGGGCTGCGCACTCCATTCTTGCAAAGGCATCTTCTTCTGATGGAGTAACTATCACCGTTGAATGTTCTTTTGCTGCTGTAACTTCTGCACCTTCCATTGCAGGCTTGCCTTCTTCGAAAGTTTCTACGACCTCCGCTGATTTATTCTTCTTACGTCAAACCAGTAAGGATTCCAGCACAAAATTAGAGTGGAAACCATCACCTAATCCCTTTCTTTTTGGGATCTTTGACCCACCAAATCGTTTGGAGGAGAAGAAAGTTTCTCTGACTTCAATATCCAACGCACGAAAATTGCAGATCCAGCAAATACTTGGTGATGATGAAGTTTTTAAGACCACGCAGGATCCTATTACCGTGTCCATCGCCGGAGACTCCGTTACACTGCACACCGGAGTTGATTCTTTGAGGATTGCCGACACTGTGTCGGACTCCACTCCCCTCACGATCTATTCCGTTGATAGTGTGGTTCTTCCATCTGAATTGTTCGCGAAATCACCGTCTCCTGCTCCGGCACCAGAACCGGACTCATTCACTCACTCGATTCATAACGCTCCTCAATTCGCATCTACCGCTGTTGCACAGACAACATCAAAGAGCATCATTGAGGTACATAATGCTTGGAGTAATATTTTGCCTGGTTTATCTGCTGCTATTCTGCGGCGCTGCACCTCCAAGCTAACTCATGTTGTTTGTACTGGCACTATTTTGGCTTCTGGAGGTACTGTTGGTGCCTCGTCCCTTTATTCCCTTGATTATGCTCGGTTGGTGTTTGATAAAATGTCTGAGAGGCTGACTGTGAGCGTGGATGTACTCCAAGTGTGGGGTTCTGTTCTTGTTGATATATACCCCAAGTGTGCAAGAGTTGAGGATGGATTGCTATTTGAGGTTTGGAACCCACTAGGAATAGTAGGTGTAATCACTGCTTTCAATTTTCCATGTACTGTTCTAGGATGGAATGCTTGGATTGCATTAGTTTGCGGTAGCTGTGTTGTGTGGAATGGCCCTCCCGGCACGGGCAAAACATCGACTATTCTCGCTGTGGCACGCAAATTATATGGTACCCAATACTACAATGTGATTTTGGAGCTCAATGCTTCGGATGATAGAGGAATTGATGTTGTACGACAGCAGATTCAAGATTTTGCTAGCACTCAAAGCTTATCATTTGGAATCAAGTCCTCTGTAAAACTGGTCTTGTTAGATGAAGTCGATGCCATGACAAAGAATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAGGCACCAAGTTTGCACTTATCTGTAATCATGTAGACAAGATTATTCCAGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTACTAATGTTGTTAATAAGCCACAAAATATTACTTATAAAGGATTAATTGACTTGGTGACTGAGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAATAATTTTGAAGATCATCTTATTCTCGGGGAAGAAGGAGGAATCATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTTTAGATGGGACTACAAACTTTGCACATGGCTATCATTTAGCTTTAGGAATTGTAGAAGCTTGTTTTTAG 1680 0.4327 MSPVSSVAAKGPELQIQGKGGGAAHSILAKASSSDGVTITVECSFAAVTSAPSIAGLPSSKVSTTSADLFFLRQTSKDSSTKLEWKPSPNPFLFGIFDPPNRLEEKKVSLTSISNARKLQIQQILGDDEVFKTTQDPITVSIAGDSVTLHTGVDSLRIADTVSDSTPLTIYSVDSVVLPSELFAKSPSPAPAPEPDSFTHSIHNAPQFASTAVAQTTSKSIIEVHNAWSNILPGLSAAILRRCTSKLTHVVCTGTILASGGTVGASSLYSLDYARLVFDKMSERLTVSVDVLQVWGSVLVDIYPKCARVEDGLLFEVWNPLGIVGVITAFNFPCTVLGWNAWIALVCGSCVVWNGPPGTGKTSTILAVARKLYGTQYYNVILELNASDDRGIDVVRQQIQDFASTQSLSFGIKSSVKLVLLDEVDAMTKNAQFALRRVIEKYTKGTKFALICNHVDKIIPALQSRCTRFRFAPTNVVNKPQNITYKGLIDLVTETDKMSEAAILEVVKNNFEDHLILGEEGGIIGDAASDYLWCIDPLDGTTNFAHGYHLALGIVEACF 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi218g00054 559 SUPERFAMILY ALDH-like 300 367 IPR016161 GO:0016491
Sebi218g00054 559 SUPERFAMILY Carbohydrate phosphatase 480 551 - -
Sebi218g00054 559 PRINTS Inositol monophosphatase superfamily signature 512 528 IPR000760 -
Sebi218g00054 559 PRINTS Inositol monophosphatase superfamily signature 490 510 IPR000760 -
Sebi218g00054 559 PRINTS Inositol monophosphatase superfamily signature 533 549 IPR000760 -
Sebi218g00054 559 Pfam ATPase family associated with various cellular activities (AAA) 354 471 IPR003959 GO:0005524|GO:0016887
Sebi218g00054 559 SMART AAA_5 347 477 IPR003593 GO:0016887
Sebi218g00054 559 Gene3D - 341 468 IPR027417 -
Sebi218g00054 559 Gene3D - 469 557 - -
Sebi218g00054 559 CDD AAA 355 473 - -
Sebi218g00054 559 Pfam Aldehyde dehydrogenase family 284 368 IPR015590 GO:0016491
Sebi218g00054 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 475 IPR027417 -
Sebi218g00054 559 Pfam Inositol monophosphatase family 487 549 IPR000760 -
Sebi218g00054 559 ProSitePatterns Inositol monophosphatase family signature 1. 533 546 IPR020583 -
Sebi218g00054 559 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 352 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi218g00054 Sebi-Chr218 643658 646499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi218g00054 355 485 Core DNA Replication Machinery Family AT1G77470 82.443 1.72e-66 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi218g00054 K10756 - gmx:100805231 223.016