Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi218g00049 ATGGGAAGGGTTATTCGTGCACAGCGTAAGGGTGCCGGGTCGGTGTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCGAGGTTCCGTAGCCTCGACTTCGGCGAGCGAAATGGCTACCTGAAAGGAGTGGTCACCGACGTCATCCACGACCCTGGTCGCGGTGCACCACTCGCGAAGGTCACCTTCCGCCACCCTTTCAGATACAAGAAGCAGACTGAGCTCTTCGTCGCAGCAGAAGGCATCTACACCGGCCAGTTCATCTATTGCGGCAAGAAAGCCAATCTCGTCGTTGGGGCTTCTGGTGACTATGCTATTGTTATCAGCCACAACCCTGATAATGATACCTCTAGGATTAAGCTTCCATCTGGAGCAAAGAAGATTGTTCCAAGTGGGTGCAGGGCTATGATTGGGCAAGTTGCAGGTGGAGGGAGAACTGAGAAGCCCCTTCTTAAGGCTGGTAATGCTTACCATAAGTTTAGAGTGAAGAGGAATTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAACCCAGTTGAACATCCTCACGGAGGAGGTAACCACCAGCACATTGGTCATGCTAGTACCGTCAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCTAAAGCGGATAAGACAACTTAA 699 0.5351 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQTELFVAAEGIYTGQFIYCGKKANLVVGASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKTT 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi218g00049 232 ProSitePatterns Ribosomal protein L2 signature. 168 179 IPR022671 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Sebi218g00049 232 Gene3D - 1 86 IPR012340 -
Sebi218g00049 232 Gene3D - 87 140 IPR014722 -
Sebi218g00049 232 Gene3D Ribosomal protein L2, domain 3 141 218 IPR014726 -
Sebi218g00049 232 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 97 226 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 101 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 FunFam 60S ribosomal protein L2 1 86 - -
Sebi218g00049 232 SUPERFAMILY Translation proteins SH3-like domain 91 217 IPR008991 -
Sebi218g00049 232 PANTHER RIBOSOMAL PROTEIN L2 2 99 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 MobiDBLite consensus disorder prediction 181 201 - -
Sebi218g00049 232 Pfam Ribosomal Proteins L2, C-terminal domain 92 196 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 SMART Ribosomal_L2_C_2 78 202 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi218g00049 232 FunFam 60S ribosomal protein L2 141 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi218g00049 Sebi-Chr218 590113 591193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi218g00049 1 229 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 81.783 5.09e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi218g00049 K02938 - fve:101297413 435.261