Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi218g00035 ATGGGTATCTGTTTTTCCTCCACCAAGGTCAGCGGCTCTAATAGCAACACCGATAATCGTAAACGGAGCTCCAAGCCGCAATCCACGGCGGCGACGGAGACGGTGACGAAGAAGAATCAGCAGAGGAATTCTCAGCAGCAAAGGCCCAAAGAGAAAACGAGTTCACGGCGACAAGGGGGGCATATCCCATGTGGAAAGCGCACAGATTTCGGTTACGAGAAAGACTTTGATAAGAGATTCTCGCTTGGGAAATTGTTGGGGCATGGGCAATTTGGTTACACATATGTTGGAATTGATAAAGCGAATGGGGATCGCGTCGCTGTGAAGAGACTCGAGAAGAGCAAGATGGTTCTCCCCATAGCTGTTGAGGATGTTAAGAGAGAGGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCTTACGTGTACATAGTTATGGAGTTATGCGAGGGTGGGGAACTGCTTGATCGGATATTGGCCAAGAAAGACAGCCGATATTCTGAAAAAGATGCAGCAGTTATTGTAAGGCAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAACCAGAGAACTTTCTTTTCAAATCAACCAGAGAAGATTCACCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGAAGTGCATACTATGTTGCACCGGAAGTGTTAAAACGAAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGCAGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTAGGGCAAGATTAACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATCGGAGATTCCTATTGATATATCTGTCTTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCCCTGAGGGCATTGGCTAGCACACTTGATGAAGTCGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATCAGTCTTGAGGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACAGATGGGTTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTGCATCAGTTGGAGGAACATGACTCTGAGAAGTGGCAGCAACGGTCACAGGCTGCTTTTGAGAAATTTGACATAGATAAGGATGGCTACATTACTCCAGATGAACTTAGAATGCATACTGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAGGCTGATATTGACAAAGATGGAAAAATCAGCTTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATTGGTTCTCGAAATGTATCAAGCCCTAGCCACCGTCACAGCAGGAAGATCTAG 1629 0.4371 MGICFSSTKVSGSNSNTDNRKRSSKPQSTAATETVTKKNQQRNSQQQRPKEKTSSRRQGGHIPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKELTGHENVVQFFNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLNNMRQFVKYSRLKQFALRALASTLDEVELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSEKWQQRSQAAFEKFDIDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNVSSPSHRHSRKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi218g00035 542 SMART efh_1 466 494 IPR002048 GO:0005509
Sebi218g00035 542 SMART efh_1 424 452 IPR002048 GO:0005509
Sebi218g00035 542 SMART efh_1 496 524 IPR002048 GO:0005509
Sebi218g00035 542 SMART efh_1 387 415 IPR002048 GO:0005509
Sebi218g00035 542 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Sebi218g00035 542 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Sebi218g00035 542 Gene3D Phosphorylase Kinase; domain 1 73 165 - -
Sebi218g00035 542 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Sebi218g00035 542 SMART serkin_6 80 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi218g00035 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 54 509 - -
Sebi218g00035 542 MobiDBLite consensus disorder prediction 1 48 - -
Sebi218g00035 542 CDD STKc_CAMK 79 339 - -
Sebi218g00035 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Sebi218g00035 542 MobiDBLite consensus disorder prediction 1 66 - -
Sebi218g00035 542 FunFam calcium-dependent protein kinase 28-like 166 359 - -
Sebi218g00035 542 ProSiteProfiles EF-hand calcium-binding domain profile. 500 527 IPR002048 GO:0005509
Sebi218g00035 542 FunFam Calcium-dependent protein kinase 18 348 525 - -
Sebi218g00035 542 ProSiteProfiles Protein kinase domain profile. 80 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi218g00035 542 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Sebi218g00035 542 Gene3D - 356 450 - -
Sebi218g00035 542 SUPERFAMILY Protein kinase-like (PK-like) 77 351 IPR011009 -
Sebi218g00035 542 SUPERFAMILY EF-hand 369 523 IPR011992 -
Sebi218g00035 542 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
Sebi218g00035 542 Gene3D - 366 520 - -
Sebi218g00035 542 Gene3D Transferase(Phosphotransferase) domain 1 166 347 - -
Sebi218g00035 542 Pfam Protein kinase domain 82 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi218g00035 542 FunFam CDPK-related kinase 1 73 165 - -
Sebi218g00035 542 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Sebi218g00035 542 Pfam EF-hand domain pair 468 521 IPR002048 GO:0005509
Sebi218g00035 542 Pfam EF-hand domain pair 386 449 IPR002048 GO:0005509
Sebi218g00035 542 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Sebi218g00035 542 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi218g00035 Sebi-Chr218 452840 457635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi218g00035 1 542 EF-hand Containing Proteins AT2G17890 76.357 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi218g00035 Pkinase 5.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi218g00035 K13412 - gmx:100817249 976.081