Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi218g00026 ATGGCAGAAAACAAAGACGAAACTTGTTCTGAAAGATCTCTATGTTCACGAGGTTCAATGAGTAACAAGTTCAGATACGTATTTGATAGATTATGCGGTTATTCCACTTTTTGGAAGAAAAATAGCACACCAAAAGGTCGAAGAATTTTCCACAGAGATGTGGAGAAAGAAGAATTCCAGTATGCCAGTACTCATTGTCTCTCATCCTACTACAGTGTCTTTGTTGTTCGATTAGCAATCATGGTCATGTTAGCCATCTTGATAGGGCTTCTCACTATACTAACATGGCACTTCACCAAGATTTATACAAGAAAATCACTTAATAGCTTGGCATATGGTCTGCGTTATGAACTTCTGCAACGTCCCATCTTGCGTATGTGGAACATTTTGAACTCTACTTCTGAAATTACAACAGCTCAGGTCAAGTTATCTGAGTATGTTATCAGACGTTACAGCAACCCTGCCACTCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCACTTTTTGCTAGTAGGAAAGCTCTCAACTCAATAACTATCAATTATAAGAATGGATTTGTTCAAGCATTCCATAGAGATCTTAAGGACAACAACACATTTTACATCTACTCTGATCTTTCTAATTACTCCATGGTTGCCAGCAATTCTAATGAGATCAGTTCCCTTTCAACTCATCAAGCTTGGGATGACAAAGCCATTCATGGTAACTTTTCTGCAATTTGGTACCGTGAACCACTTGATCCTGTCAGTGGTGAGAAGATTGGAAAAGCTATGCAAATTGCACCTGAAGATTTGATCAATATAGCTGGTCTTTCCCAAGTACCTGATGGTGTAGCTTCTTGGCATGTTGCTGTGAGCAAGTATACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGTATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAACTAGTTGAGTTGCATAGTGGCCATATGTATTTGACTTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAGTGCACCTCTATTGTCAAATTCATCAAATCGGCCTAAGCTTAAGATGGCTGTTGATTGTGAAAATGATGTAATACGACTTGGAGCTGAGTGGTTACAAAGAAATTATGGGAGCAATTTTCCATCAAGCCATGAGATTCATGTAGAGAATGCCAAGCTTGGCCACCAGCAATATTACATTGACTCATTTTTCCTAAACTTGAAGAGACTTCCTTTGGTAGGTGTAATCATCATACCAAGAAAGTACATCATGGGGCAAGTAGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTAATAAATCAACTGGAAGCAAGAAGGAAGGCAGAGGCTTCAAGCAACTATAAAAGTCAATTCCTTGCAAATATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAGCAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTGCGTCTTCTTAACAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTGGATATGTTTTCTGTTCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACCTTTCTGATGATATGCCCAAGGTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATATTTGCAAATTTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCCAAAATCTTGCAGTGAAAGTCCAAATTTTCCTCTTGACCAGAAGAAATCACGGAGTTTACAAAAGAGCAGAGAGAAGCCAAATGCAAAGAGAACATTTATGAGAGATAACAAAGTTATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACCACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTAAAAAAGGAGGGTTCAGGGACATTGATGCGATTAAGCTTGCTTCTCAGTGCACCCATGGATGTTACAGAACAACATTGTGCAGTAGATTTGAAAGACAGTGGCTTAGTGGTACTGCTTGCTCTGCATGGCAACATGGGTCGACTAATTACATCCAAGTGGTTACAGAAAAATGGGGTGTGCACAATGGAAGCTTCTGAATGGAATGGACTAACTCAAATTTTGAGACAACTCTTTAATGCAAGAAGTTCAATCCATAATAATGACTTTGATGCACATTATCCAGTAAATGAGGGATTGAAGCCTAAACTACTCACCATAAAAGATATGAGGAACCCTGTTTTTGTCATTGTTGTTGACATTGGACTACTTGATTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTCATAGGTACTTTGGGAGAGCAAAGTTTGTGTGGATGCTAAATCATGACACCTCAAATACCATAAAGATGGAGCTCCGTAGGAAAGGGCATGTACTAATGGTCAACAAACCCCTTTACAAAGCAAAAATGATTCACATTTTGGAAGCTGTCATAAAAGAGAGAAATCTTGAACTACAAAAGAAAAACATGACTGCTCCAAGAAGCACAATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCTGAAATGGGTGGTTGTTCTAATCCTGATAGTGCCAATGGAGATAAACCAATTGTAAAGACAGCCATATCCCATCCATCATCACCATACCAGATGAGTAACTGCTCAGTTAGATTAACCAATGAAAATGAATATTTGGAAGAGAATAATATGAGGAAAGAAGAATCTTGTCAGAGTAGCCCCAATTCCAATTATACCACAGAAGACACCCAACCTAAACCACTGCCAACTAAAGAACCATCCTTTCCAACAGAAGCACAAGATGAAGAATCTGAATGTGAGGAAACACATAGGGTTACCAGCTCAAGTAAAGCAGTAAATGACAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCAACTATAATGCTTGAAAAAATGGGAGCTGCTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGATGCTCTCAATTGCATGGTAGGAGCTGAAGATTTTAGAAGGGAGTCTCTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTTACTTGCCATCCATATGACTTAATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATACGAGGCAACAAAAGCAATAAGGAAATCAGAGGAAGGAACAGGGTTGCACATTCCCATTGTTGCTCTAACAGCCCATGCAATGTCATGTGATGAAGCCAAATGTTTGCAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGTTGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA 3738 0.3973 MAENKDETCSERSLCSRGSMSNKFRYVFDRLCGYSTFWKKNSTPKGRRIFHRDVEKEEFQYASTHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTRKSLNSLAYGLRYELLQRPILRMWNILNSTSEITTAQVKLSEYVIRRYSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMVASNSNEISSLSTHQAWDDKAIHGNFSAIWYREPLDPVSGEKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKYTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLSNSSNRPKLKMAVDCENDVIRLGAEWLQRNYGSNFPSSHEIHVENAKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPKSCSESPNFPLDQKKSRSLQKSREKPNAKRTFMRDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVVKKEGSGTLMRLSLLLSAPMDVTEQHCAVDLKDSGLVVLLALHGNMGRLITSKWLQKNGVCTMEASEWNGLTQILRQLFNARSSIHNNDFDAHYPVNEGLKPKLLTIKDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHVLMVNKPLYKAKMIHILEAVIKERNLELQKKNMTAPRSTMKEGDLHEFLEIDSTHFDAASSDDSDISEMGGCSNPDSANGDKPIVKTAISHPSSPYQMSNCSVRLTNENEYLEENNMRKEESCQSSPNSNYTTEDTQPKPLPTKEPSFPTEAQDEESECEETHRVTSSSKAVNDKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVDALNCMVGAEDFRRESLQKERNTRSQTEIFTCHPYDLILMDCQMPKMDGYEATKAIRKSEEGTGLHIPIVALTAHAMSCDEAKCLQVGMDAYLTKPIDFKLMVSTILSLTKTTS 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi218g00026 1245 MobiDBLite consensus disorder prediction 1071 1085 - -
Sebi218g00026 1245 SMART HisKA_10 502 568 IPR003661 GO:0000155|GO:0007165
Sebi218g00026 1245 MobiDBLite consensus disorder prediction 1030 1085 - -
Sebi218g00026 1245 PANTHER TWO-COMPONENT HISTIDINE KINASE 59 769 - -
Sebi218g00026 1245 ProSiteProfiles Response regulatory domain profile. 1096 1241 IPR001789 GO:0000160
Sebi218g00026 1245 FunFam Histidine kinase 1-like protein 490 569 - -
Sebi218g00026 1245 Gene3D - 570 765 IPR036890 -
Sebi218g00026 1245 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 557 760 IPR036890 -
Sebi218g00026 1245 PRINTS Bacterial sensor protein C-terminal signature 724 742 IPR004358 GO:0016310|GO:0016772
Sebi218g00026 1245 PRINTS Bacterial sensor protein C-terminal signature 689 703 IPR004358 GO:0016310|GO:0016772
Sebi218g00026 1245 PRINTS Bacterial sensor protein C-terminal signature 748 761 IPR004358 GO:0016310|GO:0016772
Sebi218g00026 1245 PRINTS Bacterial sensor protein C-terminal signature 707 717 IPR004358 GO:0016310|GO:0016772
Sebi218g00026 1245 MobiDBLite consensus disorder prediction 1035 1054 - -
Sebi218g00026 1245 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 490 569 IPR036097 GO:0000155|GO:0007165
Sebi218g00026 1245 SUPERFAMILY CheY-like 1093 1241 IPR011006 -
Sebi218g00026 1245 MobiDBLite consensus disorder prediction 974 993 - -
Sebi218g00026 1245 Gene3D - 1072 1243 - -
Sebi218g00026 1245 CDD HisKA 503 564 IPR003661 GO:0000155|GO:0007165
Sebi218g00026 1245 Pfam Response regulator receiver domain 1097 1236 IPR001789 GO:0000160
Sebi218g00026 1245 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 762 IPR003594 -
Sebi218g00026 1245 SMART HKATPase_4 615 764 IPR003594 -
Sebi218g00026 1245 Pfam His Kinase A (phospho-acceptor) domain 503 568 IPR003661 GO:0000155|GO:0007165
Sebi218g00026 1245 SMART REC_2 1095 1237 IPR001789 GO:0000160
Sebi218g00026 1245 CDD REC_hyHK_CKI1_RcsC-like 1097 1237 - -
Sebi218g00026 1245 ProSiteProfiles Histidine kinase domain profile. 509 764 IPR005467 -
Sebi218g00026 1245 MobiDBLite consensus disorder prediction 654 676 - -
Sebi218g00026 1245 Gene3D - 490 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi218g00026 Sebi-Chr218 299458 305600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi218g00026 23 1245 Histidine Kinase Gene Family AT2G17820 65.158 0.0 1591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi218g00026 HATPase_c 1.2e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi218g00026 - - gmx:100814068 2110.88