Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi217g00064 ATGTCAAAATTGAGTGGTGAAATTAACCAAGCATGGCAAACAGCATGGGATGGGGTAGGACAGAGCAGTGGCAATGGAAATTATCAAGGGGAGCAATGCCCTCAGTGTGGTGCGAAATTTTCCTCAGTCACTGCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACATATCTGGGGCAAAGAAGGTGGCGATTGATGCATGTCCTAGGTGTAGTAAAGGATTTGTAGACCCGATTTCCCTTGTGGAACATGTTGAGAGGGATCACGGTGGTAGTTATAAAGCATAG 297 0.4545 MSKLSGEINQAWQTAWDGVGQSSGNGNYQGEQCPQCGAKFSSVTALVDHVQKVHERSGNISGAKKVAIDACPRCSKGFVDPISLVEHVERDHGGSYKA 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi217g00064 98 Gene3D Classic Zinc Finger 4 95 - -
Sebi217g00064 98 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 59 IPR013087 -
Sebi217g00064 98 SUPERFAMILY beta-beta-alpha zinc fingers 32 88 IPR036236 -
Sebi217g00064 98 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 97 IPR013087 -
Sebi217g00064 98 ProSitePatterns Zinc finger C2H2 type domain signature. 33 54 IPR013087 -
Sebi217g00064 98 SMART c2h2final6 31 54 IPR013087 -
Sebi217g00064 98 SMART c2h2final6 69 92 IPR013087 -
Sebi217g00064 98 ProSitePatterns Zinc finger C2H2 type domain signature. 71 92 IPR013087 -
Sebi217g00064 98 Pfam C2H2-type zinc finger 32 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi217g00064 Sebi-Chr217 1355096 1355392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi217g00064 1 98 C2H2 Transcription Factor Family AT2G41835 51.020 1.32e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi217g00064 zf-C2H2_4 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi217g00064 - - lja:Lj5g3v0889470.1 153.68