Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi217g00038 ATGGCTTCGTCTTCCTCTGATCCCGGCAAGTCCGCGGAGACTTCGGAAGCAGCGATGGCGAACGATCAGCTTTTACTGTACCGAGGGTTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCTTGTGCCGCTGGCAAACGCAGCTCCATCTACCGCGGTGTCACCAGACATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAACAAGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCGTATGACCTTGCTGCTCTGAAATACTGGGGTCCTGGGACTCTTATTAACTTTCCAGTGACTGATTATACAAGAGATCTCGAAGAAATGCAGAATGTTTCTAGAGAAGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTATCAAAATATCGTGGACTCTCCAGTGAACTGAAAACATTGGAACAGAAAGTCCAACATACAGAGCCATACCAGATGCCAGAGTTAGGAAGGCCCCATAATGAGAAAAAGCATAGTAGTTCTTCAGTCTCTGCCTTAAGTATATTGTCGCAATCTACTGCTTACAAGAGCTTGCAAGAGAAAGTGTCAAAGAGACAGGAAAATAGTGCTGAGAATGATGAGAATGAAAACAAAAATACAGTCAATGAATTGGATCATGGAAAGGCGGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCATTAGTTCCTATATTTCCTGCTGGTCTGTCTCGTACAACTGAGTGCTAA 828 0.4493 MASSSSDPGKSAETSEAAMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSELKTLEQKVQHTEPYQMPELGRPHNEKKHSSSSVSALSILSQSTAYKSLQEKVSKRQENSAENDENENKNTVNELDHGKAAYNTVDPLVDPVLWTSLVPIFPAGLSRTTEC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi217g00038 275 SUPERFAMILY DNA-binding domain 58 123 IPR016177 GO:0003677
Sebi217g00038 275 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
Sebi217g00038 275 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Sebi217g00038 275 MobiDBLite consensus disorder prediction 215 237 - -
Sebi217g00038 275 Pfam AP2 domain 59 114 IPR001471 GO:0003700|GO:0006355
Sebi217g00038 275 Coils Coil 218 238 - -
Sebi217g00038 275 MobiDBLite consensus disorder prediction 212 237 - -
Sebi217g00038 275 MobiDBLite consensus disorder prediction 172 198 - -
Sebi217g00038 275 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 163 - -
Sebi217g00038 275 Gene3D AP2/ERF domain 59 124 IPR036955 GO:0003700|GO:0006355
Sebi217g00038 275 SMART rav1_2 59 128 IPR001471 GO:0003700|GO:0006355
Sebi217g00038 275 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700|GO:0006355
Sebi217g00038 275 FunFam AP2-like ethylene-responsive transcription factor 58 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi217g00038 Sebi-Chr217 890407 892984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi217g00038 164 275 AP2-EREBP Transcription Factor Family AT2G41710 41.026 1.39e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi217g00038 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi217g00038 K09285 - gmx:100786651 309.686