Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi217g00030 ATGGCTCAGAACGTGGTTCTCCTGGTCCACTTTTTTACTGGATTGATATTGATGGTTATCTCATTCATTATGGGACTCATCCCATCCACAATAAGCGCCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGTGCTTCCATTTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTTTGTTGACACTCGCACTTGAAATTTTTCCTTCTCTCCAATTGACTTCATTCATGATAAAGAAATGGTGGCGGAAAATGAATATCTTCCAGCATAATACTACTTATCTGGAACCTCTATTAGAATCAACCCCAGAAAATGTTGTTATGGACCTCGATGAAGATGTAGATGTGAAAACAGAAAGAAACAGAGTACTTTCAGGTTCCCTTGACAATTCTATTATCTACTTGCGCAATCTTCGTAAGGTGTATTCTGAAGGAAAGTATCATGGGAAAAAAGTTGCTGTGGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGGACAAATGGAGCTGGAAAGACAACGACACTTTCTATGCTATGTGGGGAAGAATCTCCTTCTGATGGGACAGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCCTGTAAATATATTGGATATTGTCCACAGTTTGATGCTCTACTGGAATTCTTGACTGTCCAAGAGCATCTGGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTGCACAATAGACAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGGAAACTTTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCGGTGATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACGAGAATAGGGATTATGGTTGGTGGACGCCTAAGATGCATTGGAAGTCCACAACATCTAAAAACAAGATTTGGGAATCATCTAGAACTAGAGGTGAAACCTACTGAAGTGAGCTCTGTGGACTTACAAGCACTCTGCCAAGCTATTCAGGAAATACTTTTGGATGTCCCTTCTCAACCTAGAAGCTTACTTAACGACCTTGAAATTTGCATTGGGGGCATTGACTCTACCTCAGGAAATACCTCTGTTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGACGCTGGCTTGGTAATGAAGAAAGAGTGAAGACTCTAATCTCTTCTACACCTGTCTATGATGGAGCTTCTCATGAACAGTTATCAGAACAATTATTTCGAGATGGTATGTGTGAGCCTACCTTTGAATGCTTTGATTCTTGGTATCATTGA 1554 0.3958 MAQNVVLLVHFFTGLILMVISFIMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEIFPSLQLTSFMIKKWWRKMNIFQHNTTYLEPLLESTPENVVMDLDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKYHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAACKYIGYCPQFDALLEFLTVQEHLELYARIKGVPDCTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQALCQAIQEILLDVPSQPRSLLNDLEICIGGIDSTSGNTSVAEISLTREMIGLIGRWLGNEERVKTLISSTPVYDGASHEQLSEQLFRDGMCEPTFECFDSWYH 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi217g00030 517 ProSitePatterns ABC transporters family signature. 303 317 IPR017871 GO:0005524|GO:0016887
Sebi217g00030 517 Gene3D - 157 408 IPR027417 -
Sebi217g00030 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 395 IPR027417 -
Sebi217g00030 517 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 136 414 IPR026082 GO:0016020|GO:0055085|GO:0140359
Sebi217g00030 517 SMART AAA_5 196 383 IPR003593 GO:0016887
Sebi217g00030 517 Pfam ABC transporter 188 330 IPR003439 GO:0005524
Sebi217g00030 517 CDD ABC_subfamily_A 166 392 - -
Sebi217g00030 517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 166 404 IPR003439 GO:0005524
Sebi217g00030 517 FunFam ABC transporter A family member 1 155 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi217g00030 Sebi-Chr217 738035 742675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi217g00030 190 391 Calmodulin-binding Proteins AT2G36910 23.364 1.24e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi217g00030 K05643 - gmx:100803263 924.465