Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi217g00016 ATGGCCGTCATGGGTCCTTCTGGATGTGGCAAAACCACCTTACTCGACTCATTGGCAGTCTTATGTAGCTCAAGAGGAACTTTCTTGGGAACTTTGACTGTAAGAGAAAGCCTCACATACTCTGCAAACATGAGGCTTCCTTCAAAAATGACCAAAGAAGAGATAAATGAAGTGGTGGAAGAAACAATAATGGAAATGGGTTTGGAAGATTGTGCAGATAACAATATTGGGAATTGGCATTTAAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGCTCTTGAGATTTTGACACAACCTCAAGTCTTACTTCTTGATGAACCCACTAGTGGACTTGATAGTGCCTCAGCTTTCTATGTTATCCAAGCTCTAAGCAACATAGCTTGTAATGGAAAGATAGTTATTTGTTCCATTCACCAACCAAGTAGTGAAACTTTTAATCTTTTGATGATTTGCTTTTGCTCTCATGTGGGGAAAACTGTTTATTTTGGAGAAGCAAAGATGGCTCTAAAGTTTTTTGCTGATGCAGGGTTCCCTTGTCCTACTAGAAGAAATCCTTCAGATCATTTCATTTTGTGCATTAATTTGGACTTTGATTTAGTTACCGCATCACTAGCAAGATCGCATTTAAGTCTACCATCAACATCAAATTTAGCAGTAGGCATGAAAACAACAGAGGTTAGAGCAACACTTATTGAGAGTTACAAAAGTTCAGAGCTAATGATCAATGCAAGAAGAAGAATTCAACAACTGAAACCCAATGAAGAACAAGTAACTGAGTCCAACCTAAGGAGCACTACCAGCTGGTGCAGACAACTATGCACATTGACCAAGAGATCTTTCCTAAACATGACTAGGGACATGGACAACAACTCAATCTTGGCAAGAGGAAAATGTCTGTCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTACTATCAAATGTTATATCATCATTTCCTTTCCTTCTTCTAATATCACTCTCCTCTGGATTAATTATTACTTCATGGTGCAATTTCATCCGGCCTCATTGGTCCCCAATGTGTTGATGGGTATAGGAACAGCAACTGGTGTAATAATTTTTATGATGATGTCCTCCCAAATATTCAGACCACTACCTGACATCCCAAAGATATTTTGGCGCTATCCCATGTCCTACCTCAGTTTTGCAGCTTGGGCAGTGCAGGGACAATACAAGAATGACATGCTTGGGCTTGAATTTGATCCTCTGCTATCTGGGTACCCAAAAGTTTCTGGAGAACAAGTCTTAACTACGAATGAGATCATCGACACCCATTTTGTGGTTTTATGCCAAGAAAACTCTACGCTTTGGAGAAGGATGTTTACCCAGTACCAGTAA 1434 0.3954 MAVMGPSGCGKTTLLDSLAVLCSSRGTFLGTLTVRESLTYSANMRLPSKMTKEEINEVVEETIMEMGLEDCADNNIGNWHLRGISNGEKKRLSIALEILTQPQVLLLDEPTSGLDSASAFYVIQALSNIACNGKIVICSIHQPSSETFNLLMICFCSHVGKTVYFGEAKMALKFFADAGFPCPTRRNPSDHFILCINLDFDLVTASLARSHLSLPSTSNLAVGMKTTEVRATLIESYKSSELMINARRRIQQLKPNEEQVTESNLRSTTSWCRQLCTLTKRSFLNMTRDMDNNSILARGKCLSFIYGFMICLSCGGLPFFIEELKVQRALWRGCICTIKCYIIISFPSSNITLLWINYYFMVQFHPASLVPNVLMGIGTATGVIIFMMMSSQIFRPLPDIPKIFWRYPMSYLSFAAWAVQGQYKNDMLGLEFDPLLSGYPKVSGEQVLTTNEIIDTHFVVLCQENSTLWRRMFTQYQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi217g00016 477 Pfam ABC-2 type transporter 141 199 IPR043926 GO:0140359
Sebi217g00016 477 Pfam ABC transporter 2 112 IPR003439 GO:0005524
Sebi217g00016 477 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 27 290 - -
Sebi217g00016 477 SMART AAA_5 1 165 IPR003593 GO:0016887
Sebi217g00016 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 144 IPR027417 -
Sebi217g00016 477 Gene3D - 1 191 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi217g00016 Sebi-Chr217 415017 421226 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi217g00016 53 145 Calmodulin-binding Proteins AT2G36910 35.484 9.01e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi217g00016 - K05681 lja:Lj1g3v4239020.2 645.58