Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi215g00043 ATGGAGTGGAAACCATCACCTAATCCCTTTCTTTTGGGGAGCTTCGATTCACTAAATTGTTTAGAGGAAGAGATAATTTCTCTGGATCGAAAACTGAAGATCCAGGAAATGCTTGGTGACGATGAAGCTTTTAAGGTGCTCGACAAAATTCCTCATGCCAAATGCTCCATCACATTTGGCAACGAAGCGAGCCATTTTCCTAATGAGTTCACTTTTTCAATCACTTTGTCTGATTGTGCAAAACTTGAGAATATTGGCTTTGGCAAGTTAGTTCATCGTTGTGTTATTAAGAGAGGTTTTGAATTCATTTCATTTTGTCAAGGTCTTCTTATCCATCTCTATTCCAAATGCAACTTTCTAAGTTCTGCTTGCACAATATTTAACTCCACATCCCACTTGGACACTGTTTCTTGCACCGTTTTAATCTTTGGTTATGTTCAAGTTGGTTTGCCAGAGGAAGCACTCCACGTGTTTGACAAAATGTGTAATACTTGTTATCCAGACCAAGTGGCATTTATCACTGTGTTAAATGCTTACATGGCTTCAAGAAAGTTGGATGATGCATGCCAATGGCTTGAACATATGCATATGCATATGCCTACTTACAATATTGTGGACAGGGACACGAATATACTTACTCGGATCTACCAGCCTACTGAGGGAGAAGATAGCCGTGTGAATATTGTTGACCTTGAGAAACCTGTGAGCTCTGAGGTTCTCCTTGTCATCATTTTCTTTCATGGTGGAAGCTTTGCACACTCTTCAGCTAACAGTGCTATATATGACACCCTGTGCTACAGAGAAAATTATCACAGGCACACAAGGTGTTTGTATTGGGAGGGAAAGCTTATCCTCTCATTTGTTGATCAATGGTGGTTTGGGTTTATTTTTGACTGGGTTGTTCCTTTGTACAAAGTGGGAGATGCATTAGAATAG 936 0.3996 MEWKPSPNPFLLGSFDSLNCLEEEIISLDRKLKIQEMLGDDEAFKVLDKIPHAKCSITFGNEASHFPNEFTFSITLSDCAKLENIGFGKLVHRCVIKRGFEFISFCQGLLIHLYSKCNFLSSACTIFNSTSHLDTVSCTVLIFGYVQVGLPEEALHVFDKMCNTCYPDQVAFITVLNAYMASRKLDDACQWLEHMHMHMPTYNIVDRDTNILTRIYQPTEGEDSRVNIVDLEKPVSSEVLLVIIFFHGGSFAHSSANSAIYDTLCYRENYHRHTRCLYWEGKLILSFVDQWWFGFIFDWVVPLYKVGDALE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi215g00043 311 Gene3D Tetratricopeptide repeat domain 40 225 IPR011990 GO:0005515
Sebi215g00043 311 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Sebi215g00043 311 Pfam PPR repeat 136 162 IPR002885 -
Sebi215g00043 311 Pfam PPR repeat 170 196 IPR002885 -
Sebi215g00043 311 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 243 259 IPR002168 GO:0016787
Sebi215g00043 311 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 63 196 IPR046960 GO:0003723|GO:0009451
Sebi215g00043 311 NCBIfam pentatricopeptide repeat 136 163 IPR002885 -
Sebi215g00043 311 Coils Coil 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi215g00043 Sebi-Chr215 1006635 1007654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi215g00043 204 309 Carbohydrate Esterase AT3G05120 41.463 4.58e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi215g00043 - - gmx:100800995 171.785