Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi215g00040 ATGTACAACTCGGGAGGAGGAAGCAGGAACATGAGCATTCTTGCGTCGCGTACGAGCTCACGGTCGGTGACAGAAACGGTGAACGGGTCTCACAAATTCGTGATAAAGGGATACTCTCTTGCGAAGGGTATGGGAGTGGGAAAACACATCGCTAGTGAGACTTTCACCGTCGGAGGATACCAGTGGGCCATCTACTTCTATCCCGACGGAAAGAACCCTGAAGACAACTCCGCCTACGTCTCCGTCTTCATCGCTCTTGCCTCTGAGGGCACCGACGTTCGTGCACTCTTTGAACTCACCTTGCTTGATCAGAGCGCCAATGGCAAGCACAAGATTGAGCATGATGAGTTCTTTGGCAAGGTTCCTGACTCTGATATTGGATCACATTTTGGCATGCTGTTAGAGAATGAGGAAGGATCTGATGTTACTTTCTCAGTTGGTGGAGAGAGATTTCATGCCCATAAGCTTGTTTTGGCTGCTCGGTCAACTGCATTTGAAACTGAGTTTTTCAATGGGATGGAGGAAGATGGTAGTGACATAGTTGTTACTGACATGGAACCTAAGGTTTTCAAGGTAGCACTTTTCCTGAAAAATGCTTTGCTTCATTTTATTTATAAAGACACTCTTATAGAAGATGAAGAGCTCTATATGTCGCGTTCATCATTCCTGCCTTCAGTATCTGAAACATTTGCAGCAAAATTGTTAGCTGCTGCTGAAAAGTATGGTTTGCCGAGACTTAAGCTGATGTGCGAGTCTGTAATTTGCAAAGACATATCTATAGATTCTGTTGGCTATATTCTGGCTCTTGCTGATCGTTATCATGCTACAGAGCTGAAGTCCATCTGTCTACAATTTTTTGCTGAAAACCTTGTCGCTGTGATGCATTCTGATGGTTATCAGTATCTTAAGGAAAACTGTCCATTGCTGCAATCAGAACTGCTAAAGACAGTGGCAGGATGTGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGATACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGAGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGCTAACAACAACGATAGGAGTCCAGGTCAAGAAGCTTGA 1149 0.4439 MYNSGGGSRNMSILASRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSANGKHKIEHDEFFGKVPDSDIGSHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDGSDIVVTDMEPKVFKVALFLKNALLHFIYKDTLIEDEELYMSRSSFLPSVSETFAAKLLAAAEKYGLPRLKLMCESVICKDISIDSVGYILALADRYHATELKSICLQFFAENLVAVMHSDGYQYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGANNNDRSPGQEA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi215g00040 382 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 18 314 IPR045005 GO:0016567
Sebi215g00040 382 CDD BACK_AtBPM-like 255 316 IPR034090 -
Sebi215g00040 382 SUPERFAMILY POZ domain 121 257 IPR011333 -
Sebi215g00040 382 Gene3D Potassium Channel Kv1.1; Chain A 137 257 IPR011333 -
Sebi215g00040 382 FunFam BTB-POZ and math domain 1 117 252 - -
Sebi215g00040 382 SMART BTB_4 140 258 IPR000210 GO:0005515
Sebi215g00040 382 CDD MATH 29 127 IPR002083 GO:0005515
Sebi215g00040 382 SUPERFAMILY TRAF domain-like 25 114 - -
Sebi215g00040 382 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 15 136 IPR008974 GO:0005515
Sebi215g00040 382 Pfam BTB/POZ domain 132 256 IPR000210 GO:0005515
Sebi215g00040 382 CDD BTB_POZ_BPM_plant 126 255 - -
Sebi215g00040 382 ProSiteProfiles MATH/TRAF domain profile. 28 144 IPR002083 GO:0005515
Sebi215g00040 382 ProSiteProfiles BTB domain profile. 140 213 IPR000210 GO:0005515
Sebi215g00040 382 Gene3D - 258 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi215g00040 Sebi-Chr215 938026 946203 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sebi215g00040 BTB 1.9e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi215g00040 K10523 - gmx:100809683 479.174