Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00057 ATGATCTCATCAGATAAGGAAATGAGTTACAGTAGTAGCACCAACTTATTTAGTCATAGGACTTCTTCAGTGCAAGTCACTATAAATTCTCCTATTAGTCATATTGCAGGATGCTTTCAGAAGGCCTCTTTCTTGTTTGGGAGCCAAAAAGAAACTTTTCATGGAAGTATTATTCAATTTTCATTTGCTGAATTGGAAAATGCCACTGAAAATTTTTCAGCTTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTTGGCTAAAAGATGGTAGCAATGTGGCAGTCAAGAGACTAAAAGATCAAAGAGGGCCTGAAGCAGACTCTGAATTTTTTACTGAGATTGAACTATTATCTAGGCTTCACCATTGTCATCTGGTGCCACTGATTGGATATTGCTCAGAATTAAAAGGAAAAAATGTTCAGAGGTTACTAGTGTTTGACTACATGAGTAATGGCAATTTGAGGGACCGTTTAGATGGAATTTTTGGAAAAAACATGGATTGGGCTACTCGTGTTACAATTGCATTAGGAGCTGCAAGGGGTTTGGAGTATCTTCATGAGGCAGCTGCTCCTAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGATAGCTGATGACCTCCCCAGTTGTTCAGATTCTCCAGAAAGAATGAAGGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTATAGGGAGAGCCTCTCTTGAGTCTGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGGCAACCCATCCATAAATCTGCTGGCAAAGAAGAAAGCCTTGTTATATGGGCTACTCCTCGCTTAGAGGATAGTAGGCGAGTAATAACAGAGTTGGCTGATCCACAATTAAAAGGAAAATTCCCAGAAGAAGAGGTGCAGATAATGGCATACTTAGCAAAGGAGTGTTTGCTTTTAGATCCTGACACTAGACCAACTATGAGTGAAGTTGTTCATATTCTTTCAAGTATTTCACCAGGAAGATCTAGAAGGAGAAGAAACATTCCAGTGGGGCTTTTTCAGGAAGCAGAGGACGTAGACAAGCAAAAGCAGGCTCCATTGAGTAGATTTCCAGCTTGTAATTTATTGCCACTAGGTATTGAGAACAATCTTAGTGTTGGAAATGAAAATAAAGATGTAGATAAAGTTTCAACTGAGTATAGGGAGAGTTTGATCCTCTTGACTTCAAAAGGTGAGAAGAACTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACAGAACCTCGGTTTGAATCATTTTGCATGGCAAACGTCAACAATTTCCCTTGA 1380 0.3957 MISSDKEMSYSSSTNLFSHRTSSVQVTINSPISHIAGCFQKASFLFGSQKETFHGSIIQFSFAELENATENFSASNLIGLGGSSYVYRGWLKDGSNVAVKRLKDQRGPEADSEFFTEIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMSNGNLRDRLDGIFGKNMDWATRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLIADDLPSCSDSPERMKGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATPRLEDSRRVITELADPQLKGKFPEEEVQIMAYLAKECLLLDPDTRPTMSEVVHILSSISPGRSRRRRNIPVGLFQEAEDVDKQKQAPLSRFPACNLLPLGIENNLSVGNENKDVDKVSTEYRESLILLTSKGEKNWHASEEEMVDLTEPRFESFCMANVNNFP 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00057 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Sebi214g00057 459 Gene3D Phosphorylase Kinase; domain 1 46 152 - -
Sebi214g00057 459 Gene3D Transferase(Phosphotransferase) domain 1 153 366 - -
Sebi214g00057 459 FunFam receptor-like serine/threonine-protein kinase NCRK 153 363 - -
Sebi214g00057 459 CDD STKc_IRAK 78 354 - -
Sebi214g00057 459 ProSiteProfiles Protein kinase domain profile. 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi214g00057 459 SMART serkin_6 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi214g00057 459 PANTHER OS01G0750732 PROTEIN 39 356 - -
Sebi214g00057 459 SUPERFAMILY Protein kinase-like (PK-like) 52 351 IPR011009 -
Sebi214g00057 459 Pfam Protein kinase domain 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi214g00057 459 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Sebi214g00057 459 FunFam receptor-like serine/threonine-protein kinase NCRK 46 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00057 Sebi-Chr214 1146159 1148694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00057 2 455 Receptor kinase-like Gene Family AT2G28250 59.170 2.34e-172 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Sebi214g00057 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00057 - - gmx:100499641 766.148