Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00056 ATGCTAGGTACATTGCCTATACTGCCTCTCCCTGCTCCTCCGTCTGATGGAAATCTTGGTCCTCTCCCTGAGTCTCAAGTGTCTAATGAGGAGAGGGATGAGAAATCATCCAATGAAGAGCAGAACAAATTAAATTCAGCTTCTGCTCCAGCACCAGCAACAGTTGCCACACACACTAGAACTATTGGAATTATTCATCCCCCTCCTGACATTAGAACCATAGTTGATAAAACTTCCCAGTTTGTGGCTAAAAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGCAACGCCAAATTTAATTTCCTGAACCCATCGGATCCTTATCATGCATATTATCAACACCGGTTGACTGAATTTCGCACTCAGAATCAATCTTCTGCTCTGCAACCTCCTTCGCAACCTGAAGACTCAGCTGCTCCTGAATCAGCCCCATTTGCACTAGCCCCTGATAGTAATGGTGTAGCAGCAGCAGCAGAAAAGCCTGATCTTTCTGCCCAGTTTAAACCAGTAAGGAAAGTACTTGAGCCCCCAGAGGCTGAGCAGTATACAGTAAGGCTTCCTGATGGAATTACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAGTTTGTGGCTCGGAATGGGAAATCTTTTTTGACAGGATTGACAAGTAGGGAAGTTAATAACCCTCAATTCCATTTCTTGAAACCAACCCACAGTATGTTTACGTTTTTTACTTCCCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGTTTGACGGAGAAGCTGAGGAAGAGTGTCTCTGACATGACTACCGTCCTTGAAAGGTGTGTGAATAGGCTTGAATGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAGCAGGAAAGAATACAGATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAATTACCTCCTCCAATGACTATTGAGGAGGTGATAAGGAGAAGCAAGGTGTCAGCCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAAGTAGAAATGGAAATGGATGAAGAAGAGGCCCAGCTTGTTGAAGAGGGCATGAGAGCTGCTAGTTTGGAAGACAATGATGACGGGAAGAAGAACGAAGTCAGGGTTACTGAAGACCCTGAACCGCCAATGAGGATTGTGAAGAACTGGAAGAGACCAGAGGAGAGGGTTCCCACAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGGATGTTTGCCAAAATTCGAGAAACAACTCTGGCTCAGGATGATGAAATCTCAAGAAACATCGTTGGACTTGCTCGGACCCGTCCCGATATCTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTCAAGGCAGAGATAGAGAAGAAAAATGATGAGCAACCGAAGCAGGTTATATGGGATGGTCACACTGGTAGTATTGGCCGTACTGCAAACCAAGCCATGTCACAGAATATTGGGAGTGAGGATCAAAATGATGCTTCTAATAATGAAGCCAAGAACCTTCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAATTCGTCCTCTTCCGCCACCACCTGGACTAGCATTGAATCTTCCTCGTGTTCCTGTCAATGCTGTTCAGTATTCTGCACCTAACAGTGGTGGCCTTCCGATTCCTCCACCAAGGCCACCGGTCATGCCTATGATTCCATCTGTCCGGCCAGTCCCCCCTCCTCCAATGCCAATGACTTCTGGACAGCAGTCAATTATGGCTGGTCAACCACCCCCAATGCACCCATCAATTCCTATGAATAGCCAAGGAATTCACATACCTCCACCACCTGGATCTCAGTTCACCCCTGTTCCAGTTCCACGACCTTTTATGCCTCTTCCACCATCAGTGATGCCTATGATGCATCCACCACCTTTGCCACAAGGAGTACTGCCGCCGCCACCACCACCTGAGGAAGCTCCTCCCCCACTCCCAGATGAACCAGAACCAAAGAAGCAGAAGCTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAGCATCCGGGACCTGTTCGCATCAGTATATCTGTTCCTAATGTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACAGTGCAATCTCTGTCTGAAACTGTTGGCAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAGCTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGATAATATTTCACTTGCTCATTACAACATTAGTGGAGGAGAAACACTTGCCCTAACCTTAAGAGAGCGTGGTGGTAGAAAGAGATGA 2457 0.4571 MLGTLPILPLPAPPSDGNLGPLPESQVSNEERDEKSSNEEQNKLNSASAPAPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNAKFNFLNPSDPYHAYYQHRLTEFRTQNQSSALQPPSQPEDSAAPESAPFALAPDSNGVAAAAEKPDLSAQFKPVRKVLEPPEAEQYTVRLPDGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLRKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKVSAMEEDIVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDGKKNEVRVTEDPEPPMRIVKNWKRPEERVPTERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHTGSIGRTANQAMSQNIGSEDQNDASNNEAKNLPGPAAPPPRPGMPSIRPLPPPPGLALNLPRVPVNAVQYSAPNSGGLPIPPPRPPVMPMIPSVRPVPPPPMPMTSGQQSIMAGQPPPMHPSIPMNSQGIHIPPPPGSQFTPVPVPRPFMPLPPSVMPMMHPPPLPQGVLPPPPPPEEAPPPLPDEPEPKKQKLDDSALIPEDQFLAQHPGPVRISISVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNISLAHYNISGGETLALTLRERGGRKR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00056 818 SMART surpneu2 72 125 IPR000061 GO:0003723|GO:0006396
Sebi214g00056 818 SMART surpneu2 199 252 IPR000061 GO:0003723|GO:0006396
Sebi214g00056 818 MobiDBLite consensus disorder prediction 126 140 - -
Sebi214g00056 818 ProSiteProfiles SURP motif repeat profile. 74 116 IPR000061 GO:0003723|GO:0006396
Sebi214g00056 818 MobiDBLite consensus disorder prediction 41 55 - -
Sebi214g00056 818 Gene3D Surp module 58 131 IPR035967 GO:0003723|GO:0006396
Sebi214g00056 818 Gene3D - 707 817 - -
Sebi214g00056 818 MobiDBLite consensus disorder prediction 536 565 - -
Sebi214g00056 818 Pfam Pre-mRNA splicing factor PRP21 like protein 268 482 IPR022030 -
Sebi214g00056 818 ProSiteProfiles SURP motif repeat profile. 201 243 IPR000061 GO:0003723|GO:0006396
Sebi214g00056 818 SUPERFAMILY Ubiquitin-like 710 816 IPR029071 -
Sebi214g00056 818 SMART ubq_7 739 811 IPR000626 GO:0005515
Sebi214g00056 818 FunFam Splicing factor 3a, subunit 1 194 252 - -
Sebi214g00056 818 Coils Coil 285 305 - -
Sebi214g00056 818 Gene3D Surp module 194 252 IPR035967 GO:0003723|GO:0006396
Sebi214g00056 818 MobiDBLite consensus disorder prediction 702 717 - -
Sebi214g00056 818 Coils Coil 363 383 - -
Sebi214g00056 818 CDD Ubl_SF3a120 731 811 IPR035563 -
Sebi214g00056 818 MobiDBLite consensus disorder prediction 126 152 - -
Sebi214g00056 818 MobiDBLite consensus disorder prediction 679 721 - -
Sebi214g00056 818 MobiDBLite consensus disorder prediction 679 701 - -
Sebi214g00056 818 Pfam Ubiquitin family 746 813 IPR000626 GO:0005515
Sebi214g00056 818 ProSiteProfiles Ubiquitin domain profile. 759 815 IPR000626 GO:0005515
Sebi214g00056 818 FunFam Splicing factor 3A subunit 1 58 129 - -
Sebi214g00056 818 FunFam Probable splicing factor 3A subunit 1 707 817 - -
Sebi214g00056 818 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 52 768 IPR045146 GO:0003723|GO:0045292
Sebi214g00056 818 SUPERFAMILY Surp module (SWAP domain) 49 124 IPR035967 GO:0003723|GO:0006396
Sebi214g00056 818 Pfam Surp module 199 250 IPR000061 GO:0003723|GO:0006396
Sebi214g00056 818 Pfam Surp module 72 123 IPR000061 GO:0003723|GO:0006396
Sebi214g00056 818 MobiDBLite consensus disorder prediction 1 55 - -
Sebi214g00056 818 SUPERFAMILY Surp module (SWAP domain) 177 251 IPR035967 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00056 746 815 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 4.44e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00056 K12825 - gmx:100797261 1252.27