Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00055 ATGGGGTTTAGTAATCCAAGATCTGAAAGGTTTGAAGATGATCCTGAAGTAGCAAACAATGGTGACAATGGGAAGGGGATTAAGCTTAAATACAACATTGATGGAACACAAATACCTGAGCCTAGTCGCAAAACGGTTCAAAAGAAGGTGACAGGGAAGAAAGGGAAGTTCTTGAAAGTGGTTCAAGATGAAGTGTGCATTGATATTGGAATAACACTTGAAGTGACCCTCACAATTATCAGATCAGTGGTGGATGTCTTTTACATGATTCAGATTTTGATCAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCAGGTATTTGGGAGAGGAGAGCTTGTTTTAGGGTATTCTAAGATTGCAGTTAGGTACCTTCGCAAGGGTTTCTGGTTAGACTTTATTGCAGCTTTGCCTCTTCCTCAGGTGTTGATTTGGATTGTTATCCCAACTCTTAGGGGTTCAACCATGGCAAACACTAAAAATGTCCTTAGGTTTTTCATCATCTTCCAATATCTTCCGAGGTTGTTTTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACCTTATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTATCTTCTATCAATAGAACGTCAAGAAGCATGTTGGAGAAGTGTGTGTGATTTGGAGAAGTCATCTTGTCAATATGGATTCTTTGACTGCCACAGGGTTGATGATACTCTTAGGGTGTCTTGGTTTATAGCTAGTAATATCACAAATTTATGCTCACCAGATGCTGACTTTTATCAGTTTGGTATATATGCTGATGCTATGACTTCTGAAGTTACATCCTCGGCATTCTTTAATAAGTACTTCTATTGTCTCTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTAGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTCCAATCAATAACAGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTAAGAGAATCTGTGCGTAAATATGATCAATATAAATGGGTGGCTACACGAGGTGTAGATGAAGAAACTATTCTCAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTCGAGGAAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACCGAAGGGACCTATCTTGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAAATGGAGGCCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGTGAAGAGCTATTAACATGGGCCTTAGACCCAAGACCAAGTGTGATACTCCCATCTTCCACTAGAACAGTTAAAGCCATATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAAGACTACACAGTAAACAACTGAGGCATAAATTCAGGTTTTATTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCATGGAGACGGCACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCCAGGGAGAATCTTGCAGCTTCTGAGCCTGAAACACCAACATCTGGTTCAGGCTTTGCTATGTATGCAAAACCAAAAAGGGTGGGGAGGAGCACTAGGAAAGGTGTCAATATGCATTCTGGGACAGACTCTGGGGTAGTTAGTTCTTTGCAGAAGCCAGCAGAACCAGACTTTGATGAATAA 1923 0.4176 MGFSNPRSERFEDDPEVANNGDNGKGIKLKYNIDGTQIPEPSRKTVQKKVTGKKGKFLKVVQDEVCIDIGITLEVTLTIIRSVVDVFYMIQILIKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDFIAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSSCQYGFFDCHRVDDTLRVSWFIASNITNLCSPDADFYQFGIYADAMTSEVTSSAFFNKYFYCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCLELVRGRMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRARENLAASEPETPTSGSGFAMYAKPKRVGRSTRKGVNMHSGTDSGVVSSLQKPAEPDFDE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00055 640 ProSiteProfiles IQ motif profile. 556 584 IPR000048 GO:0005515
Sebi214g00055 640 CDD CAP_ED 429 551 IPR000595 -
Sebi214g00055 640 Gene3D - 60 355 - -
Sebi214g00055 640 MobiDBLite consensus disorder prediction 581 640 - -
Sebi214g00055 640 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 638 - -
Sebi214g00055 640 MobiDBLite consensus disorder prediction 615 629 - -
Sebi214g00055 640 FunFam Cyclic nucleotide-gated ion channel 1 420 536 - -
Sebi214g00055 640 SUPERFAMILY Voltage-gated potassium channels 70 351 - -
Sebi214g00055 640 Pfam Ion transport protein 75 356 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi214g00055 640 SUPERFAMILY cAMP-binding domain-like 359 546 IPR018490 -
Sebi214g00055 640 Gene3D Jelly Rolls 421 538 IPR014710 -
Sebi214g00055 640 Gene3D Helix hairpin bin 357 420 - -
Sebi214g00055 640 PRINTS EAG/ELK/ERG potassium channel family signature 342 351 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi214g00055 640 PRINTS EAG/ELK/ERG potassium channel family signature 298 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi214g00055 640 PRINTS EAG/ELK/ERG potassium channel family signature 92 101 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi214g00055 640 PRINTS EAG/ELK/ERG potassium channel family signature 209 219 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi214g00055 640 PRINTS EAG/ELK/ERG potassium channel family signature 81 91 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi214g00055 640 PRINTS EAG/ELK/ERG potassium channel family signature 392 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Sebi214g00055 640 ProSiteProfiles cAMP/cGMP binding motif profile. 427 517 IPR000595 -
Sebi214g00055 640 MobiDBLite consensus disorder prediction 1 25 - -
Sebi214g00055 640 SMART cnmp_10 420 551 IPR000595 -
Sebi214g00055 640 FunFam Cyclic nucleotide-gated ion channel 1 356 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00055 Sebi-Chr214 1122008 1125587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00055 57 639 Ion Channels AT2G28260 73.818 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00055 K05391 - gmx:100786868 1022.31