Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00047 ATGAAGGACTCTTGGTTTTTCGACAAGAATTTTAATGCCCTCTCAGATGAGATGTTTGATGATGTCCTCAAGTTTTTCGATTTCCCTCTGGAAGATGTGGAAACTAATGCTGTTGAAGAAGACTGGGATGCTCAATTTAAACGCCTTGAAGAGCCTTGTTTTGATGTTTTTTCAGTATCATCAGCTGGGCTGTGTGGGAAAACTCAAAATGAAAATCACCAATTTGGGAAGGGCTTCTCTGCTTCTTGTAATGGGATTTCCCCAATAAAACAGCTGGAAAAGACTGCAGGAGCAACATATGGAAAAACCATTCCAAACCAGAATGTCTCTTTCATTGGAAAAGATTTTAAACAGTTCCAAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGCAGTTCTTCCTCAGTTGAGAATTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTGCTCGAAGTAAACGCATGCGTCCTTCAAGCCTCAGTCATCTATTCTCAATTCCTTTCATCCATAACTCACCAGCTTTGCAAAAATATCAAAGGACACCTGCCTCTGAATTGGATTTTGAAACATGTGTTGCTGGGAAACTACCAAACACAGTAAAAAAACAAAGGAAAAAGGATATGTCCCTGCTATCAGGTGATGTTGAGATGATGAAGGGATCCTCATCACAGGATTCAGTTGTCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCGCAATGGAGAGAGGGACCTATGGGACCCAAGACACTATGCAATGCTTGTGGTGTTCGTTACAGGTCTGGCCGCCTCTATCCTGAATACCGGCCTGCTGCTAGCCCGACTTTTATAGCATCACTGCACTCAAACTGTCACAAGAAGGTCCTGGAGATGAGAGGAAAGGTCATGCAGGAAGCTGTTAGGGGTCCTATGCTGGCTTCATCAAATCTTCATGGAAACTCTGTAGGATAA 960 0.4323 MKDSWFFDKNFNALSDEMFDDVLKFFDFPLEDVETNAVEEDWDAQFKRLEEPCFDVFSVSSAGLCGKTQNENHQFGKGFSASCNGISPIKQLEKTAGATYGKTIPNQNVSFIGKDFKQFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRARSKRMRPSSLSHLFSIPFIHNSPALQKYQRTPASELDFETCVAGKLPNTVKKQRKKDMSLLSGDVEMMKGSSSQDSVVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAASPTFIASLHSNCHKKVLEMRGKVMQEAVRGPMLASSNLHGNSVG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00047 319 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Sebi214g00047 319 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Sebi214g00047 319 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Sebi214g00047 319 Gene3D - 224 305 IPR013088 GO:0006355|GO:0008270
Sebi214g00047 319 FunFam GATA transcription factor 222 308 - -
Sebi214g00047 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 288 - -
Sebi214g00047 319 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Sebi214g00047 319 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Sebi214g00047 319 PANTHER GATA TRANSCRIPTION FACTOR 34 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00047 Sebi-Chr214 957655 960977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00047 14 297 C2C2-Gata Transcription Factor Family AT1G08010 40.278 1.10e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi214g00047 GATA 7.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00047 - - gmx:100813303 469.929