Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00043 ATGGCCATGGCTGTGGCTGAACACAGAGAAAGCAGCATTGACAGGCACCTTGATTCTTCTGGGAAATATGTGCGCTACACCGCGGAACAGGTTGAAGCTCTTGAACGGGTTTACACAGAGTGCCCCAAACCCAGTTCCTTGCGAAGGCAGCAACTGATCCGAGAGTGCCCCGTTCTCGCAAACATCGAGCCTAAGCAGATCAAAGTTTGGTTCCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGGCTTCAGGCTGTGAACCGGAAACTAACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAACAGGTGTCACAGCTGGTATGCGAGAATGGGTTCATGAAGCAGCAATTGCATACACCTTCAGCAGCAGGAACTACTGATGGGAATGGTGATTCGGTGGTTACTACTCCTCAGAATTCTATGAGAGATGCTAATAACCCCGCTGGATTCCTATCAATTGCAGAGGAGATGTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTAAGAAGATTGCGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGGGATTGTCGGAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTCCTGCCCGGGATTTCTGGACTCTAAGATACACTACAAATTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTATCTGGTTCTGGCGCTGGGCCTAATGCTGCTGCTGCCGCTCAGTTTGTGAGGGCTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGACGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTACAGGCATGGAGTGTGCCAGAAGTGATCCGACCACTATATGAATCATCAAAAATGGTAGCTCAGAGAATGACAATTGCAGCACTTCGCTACATCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATGGCTTGGGTAGGCAGCCTGCTTCTCTGAGAACTTTTAGCCAAAGGTTGAGCAGAGGCTTCAATGATGTTGTCAATGGATTCAATGATGATGGCTGGTCTGTGCTGAACTGTGATGGCGCTGAGGATGTTATTATTGCTGTTAATTCAACCAAAAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTGACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTAATCCAAAACATCCCTCCTGCAGTTTTAATTCGCTTTCTGAGGGAACATCGCTCAGAATGGGCTGATTTTAATGTTGATGCCTATTCTGCCGCATCACTTAAAGCTGGCTCCTATGCCTATCCGGGAATGAGGCCTATGAGATTCACTGGCAGTCAAATGATCATGCCTCTTGGACATACAATTGAAAATGAAGAGATGCTAGAAGTTATCCGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGTTATGTAGTGGAATTGATGAGAATGCTGTTGGGGCTTGTGCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTATCCCGTTGGATTCACAACCAGGTGATAAAAAGGACACAATGACAACAAATCGAACATTGGATCTAACATCTGGTCTGGAAGTAGGCCCAGCAACAAATCATCCTGCTGGAGATGCATCATCATGTCATAACAATCGATCAGTGTTGACTATTGCCTTCCAGTTTCCATTCGAGAGCAATTTGCAGGATAATGTTGCAGTCATGGCACGTCAGTATGTCCGTAGTGTAATTTCCTCCGTGCAGACGGTTGCCATGGCTATATCTCCATCTGGTGTAAATCCAGCTGTTGGAGCAAGACTCTCTTCTGGCTCTCCAGAAGCTCTTACGCTAGCTCAATGGATCCGCCGAAGTTATAGGCAAGTCTGCACATATCTCTGTTTAATATTTCCAACAGGGTCTGAAAGTTAA 2172 0.4632 MAMAVAEHRESSIDRHLDSSGKYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMKQQLHTPSAAGTTDGNGDSVVTTPQNSMRDANNPAGFLSIAEEMLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPKKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPMTLAPARDFWTLRYTTNLDNGSLVVCERSLSGSGAGPNAAAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLQAWSVPEVIRPLYESSKMVAQRMTIAALRYIRQIAQETSGEVVYGLGRQPASLRTFSQRLSRGFNDVVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTLLGGILCAKASMLIQNIPPAVLIRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGSQMIMPLGHTIENEEMLEVIRLEGHSLAQEDAFVSRDIHLLQLCSGIDENAVGACAELIFAPIDEMFPDDAPLVPSGFRIIPLDSQPGDKKDTMTTNRTLDLTSGLEVGPATNHPAGDASSCHNNRSVLTIAFQFPFESNLQDNVAVMARQYVRSVISSVQTVAMAISPSGVNPAVGARLSSGSPEALTLAQWIRRSYRQVCTYLCLIFPTGSES 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00043 723 SMART HOX_1 19 85 IPR001356 GO:0003677
Sebi214g00043 723 Gene3D - 196 378 IPR023393 -
Sebi214g00043 723 SUPERFAMILY Bet v1-like 161 373 - -
Sebi214g00043 723 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Sebi214g00043 723 CDD homeodomain 22 82 IPR001356 GO:0003677
Sebi214g00043 723 CDD bZIP 74 113 - -
Sebi214g00043 723 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
Sebi214g00043 723 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Sebi214g00043 723 MobiDBLite consensus disorder prediction 127 150 - -
Sebi214g00043 723 ProSiteProfiles START domain profile. 152 380 IPR002913 GO:0008289
Sebi214g00043 723 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Sebi214g00043 723 Coils Coil 77 118 - -
Sebi214g00043 723 CDD START_ArGLABRA2_like 156 372 - -
Sebi214g00043 723 Pfam START domain 162 369 IPR002913 GO:0008289
Sebi214g00043 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 709 IPR044830 GO:0003700
Sebi214g00043 723 SMART START_1 161 371 IPR002913 GO:0008289
Sebi214g00043 723 Gene3D - 16 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00043 Sebi-Chr214 900102 904731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00043 1 706 Homeobox Transcription Factor Family AT5G60690 82.394 0.0 1219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi214g00043 START 1.4e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00043 K09338 - gmx:100804870 1251.11