Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00028 ATGAGTGCTGAGGAAAAACGTGATGCACCTTCTTGCAAACGAACAGCTTCTCTCCCAGTTCCCAAGGATTTTGTTGCAATAAGGATGCCACTGACGCCAAGTCCAACTCCTACTCATAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCGAGTAATAACTGTCCAGGGCCTTCAGCATCAAGAACCAAATCATCATCCATAAGAAGCATCTTACCTAAAATTGGCTTCAGGAATCGGACATCATCAGATATTGAAAAGGCTATAATTGCTGTTCCAGAAGGTTCTTCTTCAGGTCCTCAAGAAACCAAGTCCTCAATCTCAAGATCAGTGTCCTTGTCTAAGATATTTACTCCTAAGATTAAGAGAACGTCATCATTACCAGTAGAAGAAATTGGACGTGCTAACACAGAATCTGCTCTGAGTGGATGTATTGGTGGTTCTCCATATAGAAGAGAGACCCAGGGGACTATAGCTCGCACTCGTTCAGAGCCTGTCAACAACCAAGATAAAAGCATAAGGAAAATGGATAGGTTCTTCCGCGTTATTCCTTCCACTCCTCGAGTAAAGGAAGTGAATGAATGGTTGAACTCATCCACAGCAAAGGATACTGAAAATGATGGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTCAAGCTGGAATGTAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAGTGGTTTAGTATCAAAGGTAATAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCAGACTGTTCGAACTCAGAATAATGGAGCAAGGATTTGGCAGGAACTGCCGGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTTGGAAAAATGGGAACCAGAGCAATTTTCATATCTCTTCCATTTTCCTGTGTTCTTGGTCTACTCTCCTCAATGACATCATCAACCATGGTGAAGAGCAGCAAGTTCATCTGGATTTATGCAGGTGCCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCATGGTTGGTAAGCAAGCAGTTCTGTCAATCCTTCTTGCATCATTTGCTGGGTTTGGTGTAGTGATGAGTGGAAGTTCAATTCTTGTGGAGTTAGTCAGATGGAAAAGAAGATGGCAGGCTTTATCAGAGCATCAGAATCAGCATGCTTCTCAAGTAATGACACAAGATGGACAATACTCTCATTCAGGCCTTCCCAACAGCAATCAAACTGCTGTGTAA 1347 0.4306 MSAEEKRDAPSCKRTASLPVPKDFVAIRMPLTPSPTPTHKKVNFLVTSRSVDAPSNNCPGPSASRTKSSSIRSILPKIGFRNRTSSDIEKAIIAVPEGSSSGPQETKSSISRSVSLSKIFTPKIKRTSSLPVEEIGRANTESALSGCIGGSPYRRETQGTIARTRSEPVNNQDKSIRKMDRFFRVIPSTPRVKEVNEWLNSSTAKDTENDGDGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIQTVRTQNNGARIWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFISLPFSCVLGLLSSMTSSTMVKSSKFIWIYAGAQFALVVLFAHIFYSMVGKQAVLSILLASFAGFGVVMSGSSILVELVRWKRRWQALSEHQNQHASQVMTQDGQYSHSGLPNSNQTAV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00028 448 Pfam RING-variant domain 223 270 IPR011016 GO:0008270
Sebi214g00028 448 SMART ringv_2 222 271 IPR011016 GO:0008270
Sebi214g00028 448 CDD RING_CH-C4HC3_MARCH 223 271 - -
Sebi214g00028 448 PANTHER OS02G0165000 PROTEIN 14 429 - -
Sebi214g00028 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 278 IPR013083 -
Sebi214g00028 448 ProSiteProfiles Zinc finger RING-CH-type profile. 215 277 IPR011016 GO:0008270
Sebi214g00028 448 MobiDBLite consensus disorder prediction 50 70 - -
Sebi214g00028 448 MobiDBLite consensus disorder prediction 428 448 - -
Sebi214g00028 448 SUPERFAMILY RING/U-box 219 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00028 Sebi-Chr214 567543 571910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00028 212 277 C3H Transcription Factor Family AT2G37950 46.269 3.59e-13 66.6