Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00025 ATGGGCTGTTTTAGTTGCTTCGGGTTGATCAAAAAACAAAAACGTCGACGGACTAAGCGTGGCATCAACAATTTTCTCTCCCACGGGCTATTGACGGATGGAGAAACTGAAGGTGATGAGGTTTCATATAGTGGTGAGGCTACTAGTAACACCACCAGTGGAGATGATAATGAGGTGCAAATTTTACCCAACCGGTCTGAGGAAATTTTGACCTTCAGAGCTGAGAATGGCATGATTTGTAGGCCGTTTCCTGTTAAGGAAACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGAGAATATAAGATTGGTTCTGGTAGCTATGGCAAAGTGGCTCTTTATCGAAGTTCTGTTGATGAAAAGCATTATGCAATTAAGAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTAATGATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTGATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGCCGTCCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCGGGATTAACATATCTTCATGCTCATAATATAGTTCATGGAGATATAAAACCCGATAATCTGTTAATTACCCGTCATGGCAAAGTAAAGATAGGGGATTTCAGTGTCAGCCAAGCTGTTGAGGATGGTAATGATGAACTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGCCTTACTTATCATGGTAAAGCTTCAGATACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATACTGGGTGAATACCCATTTCTCGGAGACACACTTCAAGATACATATGACAAAATAGTCAATAATCCTATAGAACTCCCAGATGACATTAACCCGCAGTTAAAGAATTTAATAGAAGGGTTACTTTGCAAAGACCCAAAACTAAGGATGACATTGGGTGAGGTTGCGGAGCATAGTTGGGTTATTGGAAATGATGGGCCAATTGGTGAGTACTTGTGTTGGTGCAAACGCAAGAGCCTGCAGAGGGAAGACTTTGATGAGAGCAATCTGCTTTCATGA 1173 0.4194 MGCFSCFGLIKKQKRRRTKRGINNFLSHGLLTDGETEGDEVSYSGEATSNTTSGDDNEVQILPNRSEEILTFRAENGMICRPFPVKETCKLVRSEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDEKHYAIKKLRVAPSETAMTDVLREVMIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIGDFSVSQAVEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPIELPDDINPQLKNLIEGLLCKDPKLRMTLGEVAEHSWVIGNDGPIGEYLCWCKRKSLQREDFDESNLLS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00025 390 MobiDBLite consensus disorder prediction 35 55 - -
Sebi214g00025 390 Gene3D Transferase(Phosphotransferase) domain 1 96 382 - -
Sebi214g00025 390 CDD STKc_LKB1_CaMKK 112 359 - -
Sebi214g00025 390 ProSiteProfiles Protein kinase domain profile. 106 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi214g00025 390 FunFam Serine/threonine-protein kinase Ssp1 100 194 - -
Sebi214g00025 390 ProSitePatterns Protein kinases ATP-binding region signature. 112 136 IPR017441 GO:0005524
Sebi214g00025 390 Pfam Protein kinase domain 108 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi214g00025 390 FunFam Serine/threonine-protein kinase GRIK2 96 389 - -
Sebi214g00025 390 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 57 362 - -
Sebi214g00025 390 SUPERFAMILY Protein kinase-like (PK-like) 102 368 IPR011009 -
Sebi214g00025 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Sebi214g00025 390 SMART serkin_6 106 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00025 Sebi-Chr214 459739 464682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00025 112 366 CBL-interacting serine-threonine protein kinases AT5G35410 33.852 7.95e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Sebi214g00025 Pkinase 4.2e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00025 K00908 - gmx:100776013 690.649