Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00017 ATGATGTCTGAAGAAGCACTTTCTGCTGTTCCTTCCAAGCTCTTAGTTCAACCTCATGATCACCCAAACTCATCAAACCCTAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAATCCAGATGCGGAAGTGATTGCTCTGTCACCAAAGTCACTGATGGCAACGAACCGTTTCGTGTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAACTGCATCGGCGTGGCCACAATCTCCCATGGAAGCTTCGGCAGAGAACGAACCAAGAGGTGAAGAAGAAGGTTTATGTGTGTCCAGAGAAGAGCTGCGTGCACCATGACCCTTGCAGAGCACTGGGAGACCTCACAGGGATTAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATACGCAGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAGATGTGACTGTGGCACACTATTCTCCAGGAAGGATAGCTTCTTAACGCATAGAGCCTTTTGTGATGCCTTGGCGGAAAGAAGTGCAAGACTAACTTCAATTCCATTAGTTTTATCTAACTTTGGGAATGATCCTTTGATGATGAACGCTCAAGCAGTACCCAGAAATATCTCCCAGAGTTTATTTGGGTTTCAGCATGAATTGGATGGGTCAGGCCCAGAATCATTCATGGGGAATTTTGTTGACTATGGGCAGAAGAGGGTGTCACAATGGAATAATAATCCTCAGCTTCATCAAAATCAGAACACAACTCATCACATGTCAGCTACTGCATTGCTGCATAAAGCAGCTCAAATGGAATCTGGGAGGATCAATGGAAATACTACTTTCAACAATAATAATAATGTGTTTGGCTTGCTGAGCTCTAATCTCTCAAGCAACAACAACAGGAATAGTACTAGTATTGGGGAAATTCAGAAGTTTTTCAAGGAGGAAAATCAAGGTGAAAACTTGAACTACATTAACCAGTCAATTATGGATATGGAGAAGCAAGTATATTCAGGTTCAAATAGTGAAGACCAACTCAGCTTAACAAGAGATTTTCTTGGAGTTGGAGATGACAGCTCATTGAACAGGCCTTTCTTGCAGCAAGAGTTTTCTGCCAAGTTCAATCCAATGGAACAGGTTGATGTCATGAACCTGCAAGGCCAGTTCAGTGGACATTACTGA 1212 0.4299 MMSEEALSAVPSKLLVQPHDHPNSSNPNPNSNSVKRKRNPDAEVIALSPKSLMATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTNQEVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCDALAERSARLTSIPLVLSNFGNDPLMMNAQAVPRNISQSLFGFQHELDGSGPESFMGNFVDYGQKRVSQWNNNPQLHQNQNTTHHMSATALLHKAAQMESGRINGNTTFNNNNNVFGLLSSNLSSNNNRNSTSIGEIQKFFKEENQGENLNYINQSIMDMEKQVYSGSNSEDQLSLTRDFLGVGDDSSLNRPFLQQEFSAKFNPMEQVDVMNLQGQFSGHY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00017 403 MobiDBLite consensus disorder prediction 18 35 - -
Sebi214g00017 403 FunFam protein indeterminate-domain 12-like 37 105 - -
Sebi214g00017 403 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Sebi214g00017 403 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Sebi214g00017 403 Gene3D Classic Zinc Finger 112 191 - -
Sebi214g00017 403 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 377 IPR031140 -
Sebi214g00017 403 MobiDBLite consensus disorder prediction 1 39 - -
Sebi214g00017 403 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Sebi214g00017 403 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Sebi214g00017 403 Gene3D Classic Zinc Finger 34 109 - -
Sebi214g00017 403 SMART c2h2final6 58 80 IPR013087 -
Sebi214g00017 403 SMART c2h2final6 99 129 IPR013087 -
Sebi214g00017 403 SMART c2h2final6 134 154 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00017 Sebi-Chr214 331438 333080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00017 26 191 IDZ Gene Family AT3G50700 83.140 7.27e-107 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi214g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00017 K25870 - cave:132163616 375.555