Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00016 ATGGAGGGAGATCAACAGGGTTCTAATTCTAATTACACCTTTCCACCTGGCTTCAGATTCCACCCCTCTGATGAGGAACTCATAGTTCATTACTTGCAAAACAAAATCAGCTCACGTCCACTTCCAGCTTCTATTATAGCTGAAATTGATCTGTATAAGTATAATCCGTGGGAGTTACCTAATAAGTCTTTGTTTGGGGAGGAAGAGTGGTATTTCTTTAGTCCAAGAGATAGGAAATACCCAAATGGATTAAGGCCAAACAGAGCAGCAGCTTCAGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCTAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTATTTTATTCAGGTCGACCTCCTAAGGGTGCTAAGACTGACTGGATCATGAATGAATATAGATTGGTTGACACAATCACCAAATCCTCTCAGCTAAAAGGTTCCATGCGGGAGTTCAAGCTTGTGCCCTTAAATGAGTTGGATGATTGGGTACTATGCCGGGTTCGACATAAAGGCTACTCATTTAAGAGTTTGTGTGAAAATCAAGAGAATCCTTGTGAATCAAACTTGCCAGCAAATGTATCAAGGAGTGAAGAATACCCAACAAACCCAAACTTTCAGGCTGACATGATCACAGATTACCAATTCAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGGATCTATACCTCCCACTGAGAACATGTCCAATCTGAGCTTTAAGGGCAGCAAAGGCAATAATCTAGCCTCAATTTATGAAGATGGTTTCAATAAAGTGAATTCTCAAACAACAATTCCTTCTTTGGACAGTTACTTCAACCCACTAAGAAAATCTAAAGAGGATGACCATTATGAAAACCTGATTTCTTTTAACAGGAAGTTCAACAGTGAGAACAAAATAGACGAATCTCCTAGCAAGGTGTTGACCAGTAGAGAATTGAACTGCTATAACCAAAATCAGTATCAAGTTGACATTTTTAGTGGGAACCCACCAGATCTCATCAAGTTTGAAGAGCTAAACGAAATAACCTTTGCAGGAAGATACCCTCAGTGA 1077 0.4011 MEGDQQGSNSNYTFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGAKTDWIMNEYRLVDTITKSSQLKGSMREFKLVPLNELDDWVLCRVRHKGYSFKSLCENQENPCESNLPANVSRSEEYPTNPNFQADMITDYQFKDYQIIASILVGGSIPPTENMSNLSFKGSKGNNLASIYEDGFNKVNSQTTIPSLDSYFNPLRKSKEDDHYENLISFNRKFNSENKIDESPSKVLTSRELNCYNQNQYQVDIFSGNPPDLIKFEELNEITFAGRYPQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00016 358 Gene3D NAC domain 23 181 IPR036093 GO:0003677|GO:0006355
Sebi214g00016 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 275 - -
Sebi214g00016 358 SUPERFAMILY NAC domain 12 177 IPR036093 GO:0003677|GO:0006355
Sebi214g00016 358 ProSiteProfiles NAC domain profile. 14 177 IPR003441 GO:0003677|GO:0006355
Sebi214g00016 358 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00016 Sebi-Chr214 281575 283253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00016 9 188 NAC Transcription Factor Family AT1G69490 63.333 1.69e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi214g00016 NAM 3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00016 - - gmx:100817193 592.038