Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi214g00015 | ATGTCCGTCATCGACATTCTCTTCCGCGTCGACGCCATATGCCACAAATATGACAAATACGACATTGATAAACAACGCCAGGACAACGCCTATGGCGATGACGCCTTCGCTCGTCTCTACGCTGCAGTTGAATCCAGCATTCAAGAATCTCTCAATAAATCTGAGCTTGCTTCCACTGAGAAGAACAGGGCAGTTGCTGCGGCTTTGAATGCAGAGGTTCGTCGAACCAAAGGTAGATTGATGGACGAAGTTCCTAAACTGCGCAAACTGGTGAATAAGAAGGTTAAAGGTCTCACAAATGAAGATATAGCCATTCGTCATGATCTTGTTCTGGCATTGCCAGAAAGAATCCAAGCAATACCAGATGGTATTACTGGAGCATCTAATCATACTGGGGGATGGGCAGCTACCTCATCCAATCCTCAAATCAAGTTTGATTCATCAGGGGGAAATCTTGACAGTGAATATTTCCAGCAAAGTGAAGAATCCAGTCAGTTTAGACAAGAGTATGAAATGCGCAAGATGAAACAGGATGAAGGGCTTGATATCATATCAGAGGGATTGGATACCCTGAAGGATATGGCTCATGATATGAATGAGGAATTAGATCGGCAAGTTCCTTTAATGGATGAAATTGACACAAAGGTGGATAGGGCAACAGCTGATGTGAAAAACACTAACCTAAGGCTGAAGAAAACTCTCACCGAGCTGAGGTCTAGTCGAAATTTCTGCATTGACATCATTCTTCTGTGTGTTCTTCTGGGAATCCTTGCCTATTTATACAAAGCTAAGTAA | 795 | 0.4314 | MSVIDILFRVDAICHKYDKYDIDKQRQDNAYGDDAFARLYAAVESSIQESLNKSELASTEKNRAVAAALNAEVRRTKGRLMDEVPKLRKLVNKKVKGLTNEDIAIRHDLVLALPERIQAIPDGITGASNHTGGWAATSSNPQIKFDSSGGNLDSEYFQQSEESSQFRQEYEMRKMKQDEGLDIISEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDRATADVKNTNLRLKKTLTELRSSRNFCIDIILLCVLLGILAYLYKAK | 264 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi214g00015 | 264 | CDD | SNARE_Qc | 176 | 232 | - | - | |
| Sebi214g00015 | 264 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 171 | 233 | IPR000727 | - | |
| Sebi214g00015 | 264 | SUPERFAMILY | SNARE fusion complex | 164 | 232 | - | - | |
| Sebi214g00015 | 264 | Gene3D | - | 171 | 232 | - | - | |
| Sebi214g00015 | 264 | PANTHER | SYNTAXIN | 45 | 252 | IPR045242 | - | |
| Sebi214g00015 | 264 | SMART | tSNARE_6 | 166 | 233 | IPR000727 | - | |
| Sebi214g00015 | 264 | FunFam | Putative syntaxin-71-like | 171 | 232 | - | - | |
| Sebi214g00015 | 264 | Pfam | SNARE domain | 208 | 257 | IPR000727 | - | |
| Sebi214g00015 | 264 | ProSitePatterns | Syntaxin / epimorphin family signature. | 177 | 216 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi214g00015 | Sebi-Chr214 | 277472 | 280113 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi214g00015 | 1 | 261 | SNARE and Associated Proteins | AT3G09740 | 69.202 | 1.78e-136 | 384 |