Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi214g00008 ATGGGTAAAGAAAAGGTTCACATTAACATTGTTGTCATTGGTCATGTCGACTCTGGGAAGTCAACGACCACTGGTCATCTCATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTACGCTTGGGTGTTGGACAAGCTCAAGGCAGAGCGTGAACGTGGAATCACCATTGACATTGCCCTGTGGAAGTTTGAGACCACCAAATACTACTGCACTGTCATTGATGCACCTGGTCATCGTGACTTTATCAAAAACATGATCACCGGAACCAGTCAAGCAGATTGTGCTGTCTTGATTATTGATTCCACCACTGGAGGTTTTGAGGCTGTTTTTGTTGATTTGTTTGTGTTAATTTTGTTGCTGAGTATTTGTGGTTTGTGTGTTATGCAGATGGATGCAACAACCCCAAAGTACTCTAAGGCTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGTTACAACCCTGACAAGATCCCATTTGTCCCAATTTCTGGATTTGAGGGTGATAACATGATTGAGAGATCAACCAACCTTGACTGGTACAAGGGTCCCACTCTGCTTGAGGCTCTGGACCAGATTAATGAGCCAAAGAGGCCCTCTGATAAGCCTCTTCGATTGCCACTTCAAGATGTGTATAAGATTGGTGGTATTGGAACTGTCCCTGTGGGTCGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTTGTGACTTTTGCCCCAACTGGACTACAAACTGAGGTTAAGTCCGTAGAGATGCACCATGAAGCTCTTACTGAGGCTCTTCCTGGGGATAATGTTGGTTTCAACGTGAAGAATGTGGCAGTGAAGGACTTGAAGCGTGGTTATGTTGCTTCTAACTCCAAGGATGATCCTGCCAAGGAAGCTGCTAACTTCACTTCTCAGGTCATCATCATGAACCACCCTGGTCAGATTGGTAACGGTTATGCTCCAGTGCTTGATTGCCACACTTCACACATTGCTGTCAAGTTTTCTGAGCTCTTGACCAAGATTGACAGGCGATCAGGTAAAGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCAGGGATGGTGAAGATGGTTCCCACAAAGCCTATGGTTGTTGAGACTTTCTCTGAGTACCCTCCACTTGGTAGGTTTGCTGTGAGGGACATGCGTCAAACTGTGGCAGTTGGAGTCATCAAGAGTGTGGAGAAGAAGGAACCAACTGGTGCCAAGGTGACCAAGTCTGCTGCAAAGAAAGGTGGAAAGTGA 1326 0.457 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAVFVDLFVLILLLSICGLCVMQMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLQTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELLTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGAKVTKSAAKKGGK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi214g00008 441 FunFam Elongation factor 1-alpha 221 308 - -
Sebi214g00008 441 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Sebi214g00008 441 Gene3D Translation factors 221 308 - -
Sebi214g00008 441 PANTHER TRANSLATION FACTOR 4 424 - -
Sebi214g00008 441 CDD EF1_alpha_II 222 312 - -
Sebi214g00008 441 Gene3D - 1 218 IPR027417 -
Sebi214g00008 441 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Sebi214g00008 441 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Sebi214g00008 441 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Sebi214g00008 441 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Sebi214g00008 441 Pfam Elongation factor Tu GTP binding domain 6 214 IPR000795 GO:0003924|GO:0005525
Sebi214g00008 441 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 222 IPR000795 GO:0003924|GO:0005525
Sebi214g00008 441 CDD EF1_alpha 9 219 - -
Sebi214g00008 441 FunFam Elongation factor 1-alpha 1 218 - -
Sebi214g00008 441 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 318 421 IPR009001 -
Sebi214g00008 441 NCBIfam translation elongation factor EF-1 subunit alpha 1 425 IPR004539 GO:0003746|GO:0005525|GO:0006414
Sebi214g00008 441 FunFam Elongation factor 1-alpha 315 422 - -
Sebi214g00008 441 Pfam Elongation factor Tu C-terminal domain 314 421 IPR004160 -
Sebi214g00008 441 CDD EF1_alpha_III 315 418 - -
Sebi214g00008 441 Gene3D Translation factors 315 422 - -
Sebi214g00008 441 Pfam Elongation factor Tu domain 2 240 305 IPR004161 GO:0005525
Sebi214g00008 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 241 IPR027417 -
Sebi214g00008 441 SUPERFAMILY Translation proteins 223 313 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi214g00008 Sebi-Chr214 86859 88297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi214g00008 1 432 Eukaryotic Initiation Factors Gene Family AT5G60390 91.176 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi214g00008 K03231 - qsa:O6P43_005068 816.224