Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00099 ATGTCTGCCACCAAGCAATCCAAGGCCAAGAAAACGGCGTCGTCGAAGAAGCCACTCTCCCACCCTCCCTTCGCTGAGATGATAACCGACGCGATTGTGAGCCTGAAGGAGAGGACTGGTTCGAGCCAGTATGCCATAACCAAGTTCATCGAAGGGAAGCACCACAAGGAGTTACCACAGACCTTCCGAAAGCTTATCCTCCATCAGCTGAAAAAGGCGGTTGCCGCCGGCAAGCTCGTTAAGGCTCCTGCGGGGAAGAAGGTTGCTGCTGCTAAGCCTGCAAGGAAAACGCCCGTAAAGAGTGTGAAGAAGCCTAAGAGCGTGAAATCGCCGGCGAAGAAAGCTAAGAAGTGA 354 0.5367 MSATKQSKAKKTASSKKPLSHPPFAEMITDAIVSLKERTGSSQYAITKFIEGKHHKELPQTFRKLILHQLKKAVAAGKLVKAPAGKKVAAAKPARKTPVKSVKKPKSVKSPAKKAKK 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00099 117 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi213g00099 117 SMART h15plus2 18 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi213g00099 117 CDD H15 20 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi213g00099 117 MobiDBLite consensus disorder prediction 97 117 - -
Sebi213g00099 117 MobiDBLite consensus disorder prediction 84 117 - -
Sebi213g00099 117 MobiDBLite consensus disorder prediction 1 22 - -
Sebi213g00099 117 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi213g00099 117 PRINTS Histone H5 signature 106 117 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi213g00099 117 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sebi213g00099 117 PANTHER HISTONE H1 7 114 - -
Sebi213g00099 117 Gene3D - 15 117 IPR036388 -
Sebi213g00099 117 Pfam linker histone H1 and H5 family 21 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi213g00099 117 SUPERFAMILY "Winged helix" DNA-binding domain 17 94 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00099 Sebi-Chr213 1443625 1444284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00099 20 82 Single Myb Histone (SMH) Gene Family AT1G49950 34.286 7.62e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00099 K11275 - gmx:100785055 96.6709