Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00089 ATGGAGGGAAAAACTGGGGATGAAGTGGTGGATATTGAGAGTTCTTCTAGCGGTTCTTTCAGTGATGATTTGGATGATGAGGGATCTTTACCTTCTGAAATTGATGACAAAGTGCATCTTGAGGAACCTCTGACAGAGGAGGAAATAGAAGACCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAATCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGATGCAAACTCTAGAGGGTGATGAACTGGAAACTGGTGTTTCTAATGAGATGACTGCTTTCAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTGCCAACTTGCTGGAACAACTTGACGGGGCTGGAATTGAGCTCCCAAGTCTTTATAAGTGGATTGAAAGAGAAGCTCCCAATGGCTGCTGCACTGAAGCATGGAAAATGAGAAATCATTGGGTTGGGTCTCACGCAACTGCTGAAATTGCTAAGTCAATTGCTGATGCTGAAAAGCATCTACATGTAAATAGACCTGTTAGAAGGCGACATGGTAAATTACTGGAAGAGGGCGCTAGTGGTTTTCTCCAAAAAAAACTTTCCGATGAAACCCAGGAGCCTGTAAATAAAGAAATCGAGGGGGATTGGGATCTGTTCAATAAATTAATTTCTGATGGAAGTGCTGTTGATGCTTCTTTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACACCACAACAAGCTGCCCTGATGGGGCTCAAATTTCCAGGAGTTAATGAGGTGGAGGAAATTGATGATGTTGATGGCAATTCTACTGATCCGTTTGTTGCGGCTGCCATTGCCAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAGTTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAGCTTCAAATCCATTTGAAACGTAGGAGGCATAAAAAAAAAAGTAAACAGCGAGAAATGAGCACGCCTATCCTGTTGACGGAGAGCCACATACAGAAGCCTTCTTCTGTTGATCATTTTAACCCTGTCATGAAGGAAGGGACTAGTGATGTTGGGGAAATTGTGTCAGACAATGACAAGGTCGCATGCCTGAATCTTAAGCATGATAAAATTGAACATTCTGATACCTGTCTTCATCTTGACGAAGAAAAGCCTATGAGTACTGGTGATTTGTCAGATCCACCCAAATCTTCATTGGACGATGTTATTGAACAGAGAGGAACCAAGCGTCTGAATGATGGTGAGCTTGGTGCTGATAATAAAAAGTCTCGGACTGTTATTGTTGACAAAGATGATGAAGCAGATGCTGCTGAAGATGAGTTGGATTGTGATACGCTACAGAATCAATCCAAGATAAAAGAAGGTTTATGTAACAGTCGTGCTGATGCTTTTCCTTCAGAGTGTCAGGATGAGAAATTTTGCTGTACAGTTTGCGATAAAGTAGCTCTTGAAGTGCACTCACACCCTCTTTTAAAAGTGATCATTTGTGGAGATTGCAATTCCTTGATGAAAGAAAAGACACGTGCAAAGGACCTGGTTGATGAGTGTTCTGAGTGTTACTGTGCATGGTGCGGAGGAAGCAGTGAATTAGTAAGTTGCAAGTTATGCAAGACATTATTCTGCATCAAATGTATACAGAAGAATCTTGGTGTAGAATTTGTTGTTGAAGCTCAGGCCACTAATTGGCATTGTTGTTGTTGCCGTCCAAATCTGCTTGAAAGACTTTCATTGCAACTAGAGAAAGCTATGGGATCTGATAATATACTAGTTTCCAGTTCTGGTAGTGATTCAGATGATTCAGATTCAGAGACAAATGTTACAATGAGCTCTAAACAAAGACGTAAAAAGAAGATTCGGAGGATACTTGATGATGCTGAATTAGGAGAAGAGACGAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCTTGAAGTCTTTGCGAGTACAATTTTCTGCCTCATCAATTGAAACGAACTCTGCTGGCTGTAATGGGAATTTGTCTGAAAGTGCAAGCATTGAAATTCTTGGTGATGCACAAGCTGGTTACATAGTGAATGTTGTAAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGGTTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGTTGTATTTTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACACTGCGATGCGAAGTGTTGATTTGGGGTTAAGAACCGCACTTATAGTCACACCTGTCAATGTACTACATAATTGGCGGCATGAGTTCATCAAATGGTCACCATCAGAATTAAAGCCTCTCAGGGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAGGGCACAACTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTATTTTTAATAGGCTACACTGCTTTCCGAAATTTGTCATTTGGAAAGCATGTGAAAGATCGGCACATTGCCAGGGAAATCTGCCAAGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACTAAGGCTGATGTCACTCAAGCCTTGAAACAAATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAATTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACATACTAATTCAACTCTGACTGATGTAAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGTTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGATCTACCTCCCAAAACTGTCTTTGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTATAAGAGATTCCTTGATGTGCATGGGTTCACTAATGTTAGGGCGCATCATGAGAAGTTAAAGAGAAGTTTTTTTGCTGGGTACCAGGCATTGGCTCGGATTATGGTTTTTTCCTTTTCGTGTTTTGTGCGTCATGATGATACAGAGATTTATTTGTCTGTAGTAGATATGGAATCACCCGGGATCTTGCAATTGTCAAAAGAAGACAAGGACTACGTGAGACAGGAAGATGCTGTTGAGAATTTTCTTGTTGATGATATCTCCAGTGATGAAAATTCAGATTCTAATGTTCTTACTGGAGAAATGAAGAATACAAATGAAGTGCTACAAAGGAAGGATGGTAATGGCTTCTTCATAAAGGGTTGGTGGAATGATCTTCTTCATGAAAAAATATATAAAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTGATAGATATACTAACCATGAGTTCTGACGCGGGCGATAAGGTGCTGGATGGAAGGACAGAGAGCTCAGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAGGAGGGTAAAATGCACATTGATTTCAACCAGAGCGGGCTCTTTGGGTATTAATCTTCATGCAGCTAACCGTGTTGTTATAGTTGATGGCTCCTGGAATCCCACATATGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAGAAAGCCTGTGTTTGCATATAGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACTATATCTAAAGAAGAAATGCTGCATCTTTTTGAGTTTGGTGATGATGAGAACCCTGAGACTTTGGCTGAACTAAGTCAAGAAAACGGTCACACTTGTGATCAAAATAACCCAATTTTGGTTGGGCATTCGCTGAAACATACAGTACCACATTCAAATGGAAGCAGTTATTCTGATAAGTTGATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGTGGGAGGCTCGGGAAGGATTTTGGAAAAGGGAATTCAGTTATACGGAGAGAAGGGGAGCAGAGGGAGGTAGGAAGAAAGTTCATGACAGTTTCAGCCTCTGGCTTGGGCAAGGGAACTGTGGATCCTTGA 4113 0.4116 MEGKTGDEVVDIESSSSGSFSDDLDDEGSLPSEIDDKVHLEEPLTEEEIEDLISELLEVESKAAEAQEALEEESLAKVESEVRQELMQTLEGDELETGVSNEMTAFKEEWEAVLDDLETESANLLEQLDGAGIELPSLYKWIEREAPNGCCTEAWKMRNHWVGSHATAEIAKSIADAEKHLHVNRPVRRRHGKLLEEGASGFLQKKLSDETQEPVNKEIEGDWDLFNKLISDGSAVDASFGSKNWASVYLASTPQQAALMGLKFPGVNEVEEIDDVDGNSTDPFVAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQIHLKRRRHKKKSKQREMSTPILLTESHIQKPSSVDHFNPVMKEGTSDVGEIVSDNDKVACLNLKHDKIEHSDTCLHLDEEKPMSTGDLSDPPKSSLDDVIEQRGTKRLNDGELGADNKKSRTVIVDKDDEADAAEDELDCDTLQNQSKIKEGLCNSRADAFPSECQDEKFCCTVCDKVALEVHSHPLLKVIICGDCNSLMKEKTRAKDLVDECSECYCAWCGGSSELVSCKLCKTLFCIKCIQKNLGVEFVVEAQATNWHCCCCRPNLLERLSLQLEKAMGSDNILVSSSGSDSDDSDSETNVTMSSKQRRKKKIRRILDDAELGEETKKKIAIEKERQERLKSLRVQFSASSIETNSAGCNGNLSESASIEILGDAQAGYIVNVVREKGEEAVRIPPSISAKLKAHQVAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRHEFIKWSPSELKPLRVFMLEDVSRDRRAQLLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHIAREICQALQDGPDILVCDEAHMIKNTKADVTQALKQMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVRAHHEKLKRSFFAGYQALARIMVFSFSCFVRHDDTEIYLSVVDMESPGILQLSKEDKDYVRQEDAVENFLVDDISSDENSDSNVLTGEMKNTNEVLQRKDGNGFFIKGWWNDLLHEKIYKELDQSGKMVLLIDILTMSSDAGDKVLDGRTESSERQKLVERFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSQENGHTCDQNNPILVGHSLKHTVPHSNGSSYSDKLMESLLSKHHPRCGRLGKDFGKGNSVIRREGEQREVGRKFMTVSASGLGKGTVDP 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00089 1370 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 747 933 IPR014001 -
Sebi213g00089 1370 Pfam Helicase conserved C-terminal domain 1143 1213 IPR001650 -
Sebi213g00089 1370 SMART helicmild6 1114 1213 IPR001650 -
Sebi213g00089 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 962 1281 IPR027417 -
Sebi213g00089 1370 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1063 1261 IPR001650 -
Sebi213g00089 1370 Coils Coil 107 134 - -
Sebi213g00089 1370 Gene3D - 696 956 IPR038718 -
Sebi213g00089 1370 CDD ADDz_ATRX 489 587 - -
Sebi213g00089 1370 MobiDBLite consensus disorder prediction 398 418 - -
Sebi213g00089 1370 MobiDBLite consensus disorder prediction 608 625 - -
Sebi213g00089 1370 ProSiteProfiles ADD domain profile. 481 613 IPR025766 -
Sebi213g00089 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 956 IPR027417 -
Sebi213g00089 1370 Pfam SNF2-related domain 747 899 IPR000330 GO:0005524|GO:0140658
Sebi213g00089 1370 CDD SF2_C_SNF 1119 1224 - -
Sebi213g00089 1370 MobiDBLite consensus disorder prediction 608 631 - -
Sebi213g00089 1370 Coils Coil 49 76 - -
Sebi213g00089 1370 Gene3D - 967 1293 IPR027417 -
Sebi213g00089 1370 PANTHER RAD54-LIKE 1144 1327 IPR044574 GO:0016887
Sebi213g00089 1370 SMART ultradead3 721 926 IPR014001 -
Sebi213g00089 1370 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00089 Sebi-Chr213 1210906 1242765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00089 1144 1266 RAD5 or RAD16-like Gene Family AT5G43530 34.959 4.09e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi213g00089 SNF2_N 5.2e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00089 K10779 - gmx:100794911 1997.25