Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00070 ATGGTTAAGGAGAAGAGTTCCATTCGAGTTGCCAATCCTTCCAATTCCATGGTGACATCGTCTTCTTCCTCGGCATCGCAATCGCAGTTCGCCTATTCCAACACCTCCTACTTCCCTGTGCCCTTTCACCTTCAGCAACCTGCAACCACTCACTACGCTGCACCGTATGTCGCTGCCGTTCAAGTCCCCGCGCTTCCAGTCGTCGGTCCCGTTCCGCCGCCACCGGTGGCCGCAGCGTACACCGTCCCGCAATATCAGGCACAGGCACAGCAGTTATTCGAGAGGGATGCACAGATAATAACACCGGAGGCTCTCGAGAGTGTCAAGGCAGCGATTGCGAACAGTGACGTCGAGCACAAAGCTGATACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAACATGGGAGGATCCTATTCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTCCCTTCCTTTAATATGGCACGAGTTGTTAGAGATAAGCGGACTGGAAAAACAAAGGGTTATGGATTTGTAAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTCGGAAATCGGCCAATAAAATTACGCAAGAGTAAGTGGAAGGAGAGGACAGATTACGAGGCACTGGAAAAACAGAAGAACCAAATTCAGAAGAAACCAAAACTGCCAAGGAGGGGTGTTCTGCACAAGTAA 777 0.4865 MVKEKSSIRVANPSNSMVTSSSSSASQSQFAYSNTSYFPVPFHLQQPATTHYAAPYVAAVQVPALPVVGPVPPPPVAAAYTVPQYQAQAQQLFERDAQIITPEALESVKAAIANSDVEHKADTKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQIQKKPKLPRRGVLHK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00070 258 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 78 238 - -
Sebi213g00070 258 SMART rrm1_1 151 224 IPR000504 GO:0003723
Sebi213g00070 258 MobiDBLite consensus disorder prediction 8 25 - -
Sebi213g00070 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 222 IPR000504 GO:0003723
Sebi213g00070 258 SUPERFAMILY RNA-binding domain, RBD 134 230 IPR035979 GO:0003676
Sebi213g00070 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 228 IPR000504 GO:0003723
Sebi213g00070 258 CDD RRM_RBM42 144 226 IPR034215 -
Sebi213g00070 258 Gene3D - 94 242 IPR012677 -
Sebi213g00070 258 MobiDBLite consensus disorder prediction 1 25 - -
Sebi213g00070 258 FunFam RNA-binding protein 42 84 235 - -
Sebi213g00070 258 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00070 Sebi-Chr213 946014 950164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00070 152 250 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 1.67e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00070 K25079 - gmx:100807693 380.948