Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00046 ATGTACCCACCACTACCCAACCTTAAAAAGAATTTTAAGTTGAAGAATCTTATGACTACACTCACTGATAAATTCAATCCTGTGGATGCGGTGCTAGTTAAAATTCCACTCATCTTCACGTCAATTGGTGTACAGATTCCATCTCAAACTTATGGAGCTTATGTACCTTCCCGTTATCAAGGGAAGTGTCATTCATCTTGTGAATGTTCCTTAAAAATTGCCTGCCACCACAGAGTCCAAAGGCTCAATGCAGAAGGTAAATACCTTCTGGACATAAAAGGGAGATTGTTTGACATACACAACCATCTAGACAACTGGAACTCAAGTGATTCCACACCTTGTGGTTGGAAGGGTGTCAGATGCAGCACTGGCATCAATCCAGTGGTGGAGTCTCTTGACTTGCATGCAATGAATCTCTCAGGGTCTTTGTCTCCCAGCATTGGTGGTCTGGTTCACTTGTATCACCTTAATCTGTCTCAAAATACTTTGTCTGGGAGTATACCTAGGGAAATTGGAAACTGTTCAAGTTTGCAGCTTCTTGGTCTCAACAATAATCGGTTTGAAGGCCAAATTCCTGCTGAAACAGGTAGGCTTTCAAATTTAGAAGAATTGTATCTTTACAACAACAAACTATCTGGGCCTTTTCCAGAGGAAATTGGCAACCTTTCTTCACTCTCAGTACTTGTTGCATTCACCAATAACCTCAATGGATCTTTGCCACGTTCTTTTGGGAAACTTAAAAGTTTAAAACGTTTCCGAGCTGGGCAGAATATGATATCAGGAAGTCTGCCCCAAGAGATAGGTGGATGTGAGAGCTTGGAGTATCTTGGTTTAACTCAAAATCAGATAACTGGTGAGATACCAAAAGAACTTGGACTGCTCAAGAACATACAATATTTGGTCCTTCGGGAAAATAATCTTCATGGGGCCATACCCAAAGAGCTTGGAAACTGTTCAAATTTGGTGGTTCTTGCTCTATATCAGAATAATCTTGTGGAAGCAATTCCCAAGGAGCTGGGAAACCTTGCGCTCCTAAAAAGGTTATACCTTTACCGGAATGAGTTGACAGGAAATATTCCAAGGGAGATTGGGAACCTTTCTCTTGCAATAGAGATTGATTTCTCAGAGAACCTGCTGACAGGTGATATACCAGTTGAGTTGGTTAAAATAAAAGGCTTGCAACTGCTTCATCTCTTTCAGAACAAGCTAACTGGTGTCATCCCACATGAGGTTACCAGCTTGAAAAACCTGACTGAACTGGATCTCTCCATTAATTATCTCAAAGGTACTATTCCTGTTGAATTTCTGAATTTGACCAGCTTGATCTCCCTGCAACTCTTCAACAACTCATTAAGTGGTACCATTCCTAAAGCACTGGGGGCAAATAGTCCACTCTGGGTGCTTGATTTATCATCCAACTACTTGGTGGGAAGAATTCCAGTCCACCTTTGCCAACATTCTAACTTGATGCTGTTGAACTTAGGATCAAACAAGCTTACTGGAAATATCCCACATGGAATTACAAGCTGCAAGTCCTTGGTGTATCTTCGTCTCTTTGGTAACAATCTCAGAGGCAGGTTTCCTTCAAATTTGTGCAAACTTGTAAATCTTTCTGCAGTGGAGTTGGATCAGAATGACTTCACCGGCCCTATCCCTCCACAAATTGGTAACTGTCAAAATTTGCAAAGACTTCACCTTTCTAACAATCACTTTATGTCTGAATTGCCAAAAGAAATTGGTAACCTCTCACAGTTGGTCACTTTTAATGTCTCATCAAATTATCTTTTTGGTAGAGTGCCTCCGGAACTGTTCAATTGCAGGAATCTCCAAAGACTTGATCTCAGCCACAACTACTTCATAGGTGCTTTACCAGTCCTTATATATCTCATGAGAATACCAGTGGATTCTATTGTGCCACAGCAAGATATAGATGGACCACACTTTCCACCTGTGACAGACATGTACTTCTTCCCGAAGGAGGAGTTAACTTTCCAAGATGTGGTTGAAGCTACTGAAAATTTTCATTCCAAATATATAATTGGAAAGGGAGGTAGTGGAACTGTGTACAGAGCAGATATATCAACTGGTCATGCAATTGCTATTAAGAAGCTGATGTCAAGCAGTGACAGCATCCATGTAAATGGTTGCTTCCGTGCTGAAATCTTAACTTTGGGAAAAGTAAGGCATCGGAATATTGTGAAATTATATGGTTTCTGCAACTACCATGGCTCCAATATAATACTTTACGAGTACATGGCAAAGGGTAGTTTGGGGGAGTTACTTCATGGAGCATCCTCTAGTCTTGATTGGTATTCTCGGTTTAGAATTGCTCTTGGAACTGCAGAAGGACTCTCTTATTTGCACCATGATTGCAAGCCTAGGATTATCCACCGTGATATAAAGCCCAATAACATACTTATTGATCATGAATTTGAAGCTCATGTTGGGGATTTTGGCTTGGCAAAACTGATTGATATGTCACGATCTAAATCAGTGTCTGCAGTTGTAGGTTCCTATGGCTACATTGCCCCTGAGTATGCATACACAATGAAAGTCACGGAAAAATGTGATGTATACAGCTATGGAGTTGTCCTTTTGGAGTTGTTGACTGGTAAGAAGCCAATCCAATCGTTAGATCAAGGTGGTGATCTTGTCACATGGGTGAGAAATCAAATCTACAAATATTCGTTGTCATTGGACATCATTGATGCTCGATTGCACCTACTAGATGAAATAGATGTCGCTCAAACTTTTGATGTCTTAAAAATTGCTCTACTTTGCACCGACACGTCTCCTTCTAGACGCCCAACTATGCGGAGTGTTGTGTCAATGCTTACAAGTTCTAGCAAAAGGACAGAGCAAACCTCATTTTCTACATGTCAAGAATCAAGCAACATGAAAGGATAA 2907 0.4069 MYPPLPNLKKNFKLKNLMTTLTDKFNPVDAVLVKIPLIFTSIGVQIPSQTYGAYVPSRYQGKCHSSCECSLKIACHHRVQRLNAEGKYLLDIKGRLFDIHNHLDNWNSSDSTPCGWKGVRCSTGINPVVESLDLHAMNLSGSLSPSIGGLVHLYHLNLSQNTLSGSIPREIGNCSSLQLLGLNNNRFEGQIPAETGRLSNLEELYLYNNKLSGPFPEEIGNLSSLSVLVAFTNNLNGSLPRSFGKLKSLKRFRAGQNMISGSLPQEIGGCESLEYLGLTQNQITGEIPKELGLLKNIQYLVLRENNLHGAIPKELGNCSNLVVLALYQNNLVEAIPKELGNLALLKRLYLYRNELTGNIPREIGNLSLAIEIDFSENLLTGDIPVELVKIKGLQLLHLFQNKLTGVIPHEVTSLKNLTELDLSINYLKGTIPVEFLNLTSLISLQLFNNSLSGTIPKALGANSPLWVLDLSSNYLVGRIPVHLCQHSNLMLLNLGSNKLTGNIPHGITSCKSLVYLRLFGNNLRGRFPSNLCKLVNLSAVELDQNDFTGPIPPQIGNCQNLQRLHLSNNHFMSELPKEIGNLSQLVTFNVSSNYLFGRVPPELFNCRNLQRLDLSHNYFIGALPVLIYLMRIPVDSIVPQQDIDGPHFPPVTDMYFFPKEELTFQDVVEATENFHSKYIIGKGGSGTVYRADISTGHAIAIKKLMSSSDSIHVNGCFRAEILTLGKVRHRNIVKLYGFCNYHGSNIILYEYMAKGSLGELLHGASSSLDWYSRFRIALGTAEGLSYLHHDCKPRIIHRDIKPNNILIDHEFEAHVGDFGLAKLIDMSRSKSVSAVVGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKPIQSLDQGGDLVTWVRNQIYKYSLSLDIIDARLHLLDEIDVAQTFDVLKIALLCTDTSPSRRPTMRSVVSMLTSSSKRTEQTSFSTCQESSNMKG 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00046 968 ProSiteProfiles Protein kinase domain profile. 674 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi213g00046 968 SMART LRR_typ_2 558 581 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 414 437 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 198 222 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 582 606 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 294 318 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 150 174 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 438 462 IPR003591 -
Sebi213g00046 968 SMART LRR_typ_2 342 366 IPR003591 -
Sebi213g00046 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Sebi213g00046 968 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 430 636 - -
Sebi213g00046 968 Gene3D Ribonuclease Inhibitor 482 556 IPR032675 -
Sebi213g00046 968 SUPERFAMILY Protein kinase-like (PK-like) 655 945 IPR011009 -
Sebi213g00046 968 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 241 333 - -
Sebi213g00046 968 ProSiteProfiles Leucine-rich repeat profile. 608 630 IPR001611 GO:0005515
Sebi213g00046 968 Gene3D Phosphorylase Kinase; domain 1 651 751 - -
Sebi213g00046 968 SUPERFAMILY L domain-like 327 625 - -
Sebi213g00046 968 Gene3D Ribonuclease Inhibitor 233 481 IPR032675 -
Sebi213g00046 968 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 130 480 - -
Sebi213g00046 968 ProSitePatterns Protein kinases ATP-binding region signature. 680 703 IPR017441 GO:0005524
Sebi213g00046 968 MobiDBLite consensus disorder prediction 943 968 - -
Sebi213g00046 968 Pfam Leucine rich repeat N-terminal domain 83 122 IPR013210 -
Sebi213g00046 968 SMART serkin_6 674 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi213g00046 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 752 963 - -
Sebi213g00046 968 Gene3D Ribonuclease Inhibitor 557 634 IPR032675 -
Sebi213g00046 968 Gene3D Transferase(Phosphotransferase) domain 1 752 966 - -
Sebi213g00046 968 FunFam Piriformospora indica-insensitive protein 2 335 429 - -
Sebi213g00046 968 SUPERFAMILY L domain-like 85 382 - -
Sebi213g00046 968 Pfam Protein kinase domain 675 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi213g00046 968 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 81 240 - -
Sebi213g00046 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 645 751 - -
Sebi213g00046 968 Gene3D Ribonuclease Inhibitor 81 232 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00046 Sebi-Chr213 588013 592079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00046 82 945 Receptor kinase-like Gene Family AT5G56040 33.923 1.50e-179 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi213g00046 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00046 - - vvo:131644205 875.159