Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00040 ATGGCTACAGAGGAGCAAGCATTTGCGTTGAAGGGCAAGTTGCGGGAACTGGTTAAGAGTATCGTTGACGGTGATGACTATTCGGTGCACGCTGCTGAAGAGGCTATTAATGCTCTTTCTGCTCTCAAGGATTTGAAATGCAGCGCTTCTTTCTCACGCAAATTGGACCATTTACCTGTTCCTCCTCAGTTTCGATGCCCCATCTCTGGTTACTTAATGACAGACCCTGTTATTTTGTCTAATGGACAGACTTATGATCGGCCATTCATACAGAGGTGGCTGAATGAAGTCCACAGAATTTGCCCTCAGACAAAGCAAGTTCTATCTCACTCCATTCTTACTCCTAATTGCTTGGTCAGAGGCATGATTTCACAGTGGTGTAAGGAGCATGGAATTGAGCTACCAAAGACTGTTGGTATTTGGGACATTGATGATGGAGAAGTAACTGATGCACATAGACACCGTTTATGTTCATTGCTTCACACGTTGTCATTGCCATCTGTGTTTGATCAAAAAGAAGCTGCAAAAGAGCTTAGGCAGTTATCAAAGAGAATGCCTTCATTTCGAACACTTTTTGGGAAGCCAGAAGTAATTCAAGAATTGCTGAGTCCATTATCAGCTGGCACAATTTGTATTGATCCTGAGCTACATGAGGACTTGATCACAACTCTTCTAAACCTCTCCATTAATGAAGATAACAAGAAAGTTTTAGCAGAGGATGAAAAGGTAATCTCCTTGCTTATTGATTCCTTGAAGTCAGGAACCACCCAAACAAGAAGCAATGCTGCAGCAGCTTTTTTCTCATTATCAGCACTTGAATCAAACAAACTCATCATTGGAAAATCAGGGGCTATCAAATATTTGGTTGACCTTTTAGAGGATGGACATCCATCAGCAGTGAAAGATGCTGCTTCAGCCATATTCAATCTATGTATGGCACATGAAAACAAAGGAAGGACTGTCAGAGAAGGGGCAATTCAGGTTATTCTTAGCAAGATCATGGACCATGTTCTAGTTGATGAGTTGTTGGCTCTACTAGCACTTCTATCTACCCATTCCAAAGCTGTTGAAGCATTGGGAAATCATGGTGCTGTCCCCTTCTTGCTGGATATGATAAGGGAGAGCAAATCAGAACGCAGCAAGGAAAACTGTGTTGCAATTCTATATACAATCTTTTTCAATGATAGAACAAAGCGGAAGGAAGTTAAAGATGATGAAATAGCTAACGGTACATTGTCTAAGCTTGCACAATGTGGGACTCCAAGGGCCAAAAGGAAAGCTACTGGTATTCTAGATAGGCTCAACATACCTCAATCCTCAAAGCACACCACTTAA 1335 0.4172 MATEEQAFALKGKLRELVKSIVDGDDYSVHAAEEAINALSALKDLKCSASFSRKLDHLPVPPQFRCPISGYLMTDPVILSNGQTYDRPFIQRWLNEVHRICPQTKQVLSHSILTPNCLVRGMISQWCKEHGIELPKTVGIWDIDDGEVTDAHRHRLCSLLHTLSLPSVFDQKEAAKELRQLSKRMPSFRTLFGKPEVIQELLSPLSAGTICIDPELHEDLITTLLNLSINEDNKKVLAEDEKVISLLIDSLKSGTTQTRSNAAAAFFSLSALESNKLIIGKSGAIKYLVDLLEDGHPSAVKDAASAIFNLCMAHENKGRTVREGAIQVILSKIMDHVLVDELLALLALLSTHSKAVEALGNHGAVPFLLDMIRESKSERSKENCVAILYTIFFNDRTKRKEVKDDEIANGTLSKLAQCGTPRAKRKATGILDRLNIPQSSKHTT 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00040 444 SUPERFAMILY RING/U-box 55 136 - -
Sebi213g00040 444 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Sebi213g00040 444 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Sebi213g00040 444 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
Sebi213g00040 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 133 IPR013083 -
Sebi213g00040 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Sebi213g00040 444 SUPERFAMILY ARM repeat 158 434 IPR016024 -
Sebi213g00040 444 Pfam Armadillo/beta-catenin-like repeat 275 311 IPR000225 GO:0005515
Sebi213g00040 444 CDD RING-Ubox_PUB 61 113 IPR045210 -
Sebi213g00040 444 Gene3D - 147 439 IPR011989 -
Sebi213g00040 444 PANTHER U BOX DOMAIN-CONTAINING 20 433 - -
Sebi213g00040 444 SMART arm_5 272 312 IPR000225 GO:0005515
Sebi213g00040 444 SMART arm_5 352 393 IPR000225 GO:0005515
Sebi213g00040 444 SMART arm_5 230 271 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00040 Sebi-Chr213 542928 544653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00040 122 443 U-box Gene Family AT3G07360 53.191 2.89e-107 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00040 - - gmx:100806132 572.392