Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00028 ATGTTTAAGTTTCTGAAAGAGGTCGTGGGTGGATCTGGAACTGGCCTCAAGGATCTCCCATACAATATCGGCGAACCTTACCCTTCTGCGTGGGGCTCTTGGGTTCATTGCCGCGGCACCTCCAAGGATGATGGTTCTCCGGTGTCAATCTTTTCTCTATCTGGAAGCAATGCTCAGGATGGACATTTAGCTGCGGGTCGTAACGGTGTCAAGCGTCTACGCACTGTTAGGCATCCAAATATTTTGTCATTTCTTCACAGTACCGAGATCGAAACTTTTGATGCCGGTTCTCCCAAGGTCACAATTTATATTGTGACCGAACCTGTAATGCCACTGTCAGATAAGATTAAGGAGTTGGGCCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGCCTGCATCAGATAGCAAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGCGTTGTTGTTACGCAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTGTCAGAGTTTGATGGGAGTAATGAATCTTCCGCTGGGCAAATGCTGCAATATGCATGGCTTGTTGGATCTCAATACAAATCAATGGAACTTGCAAAATCTGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTAATCTATGAGCTATTCTCTGGTATAAAATTGGGCAAAACGGAGGAGTTACGCAACACTGCCTCCATTCCAAAGTCTCTGCTTCCTGATTACCAGCGGCTACTGAGCTCCATGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGCGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTTGAGAAGGACACCTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTGCTTCCAACAATTATTAAACTCTTTGCCTCCAATGACCGAGCAATTCGAGTTGGCCTTCTTCAACATATTGATCAATTTGGAGAATCATTATCAGCACAAGTTGTTGACGAGCAGGTTTACCCTCATGTTGCTACCGGTTTCTCTGATACATCTGCTTTTCTAAGGGAACTTACTCTTAAGTCCATGTTAATTCTGGCTCCAAAGCTGTCTCAAAGGACCATTTCGGGATCATTATTAAAGCATCTGTCGAAGTTACAGGTTGATGAAGAACCAGCAATACGAACAAATACTACCATCTTATTAGGAAATATTGCAAGCCACTTAAATGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGTATTATGGCTTTATGTGCCACCAGTTCCTACTATGACATCACTGAAATCGCTACTCGGATTCTTCCTAACGTTGTTGTACTCACAATTGATCCTGACAGTGACGTTCGGTCTAAGGCATTTCAATCCGTTGATCAATTTTTGCAGATGGCAAAGCAATATTATGAAAAGACAAATGCAGCAGAGCCTACTGGGGGTGCAGGCACGGGAATCTCATCAATTCCAGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACCCTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCTGCAAGTTCTAATGCACTTACTCCAACAACTTCTAATGCCAGCTCAGCTGTAGATACACCTTCAACAGCACCTGTCCGTGTAAGCTCCACAACAGATTTTGCTGAACATCCTGTTCCTACATCTCCTACATCAACGGATGGCTGGGGGGAACTAGAGAATGGAATCGATGAGGAGCCTGAAAATGACAAGGATGGGTGGGATGATCTGGAACCGCTTGAAGAAACAAAGCCAGCCCTTGCGAACATTCAAGCAGCTCAAAGGCGGCCAGTTTCTCAACCTGTTTCACAGACAAAACAAGCCTCTGGTTTGCGATCCAAAAGTACACCAAAGTTGAACAAGGATGGAGATGATGATTTGTGGGGTTCCATAGCGGCTCCTGCTCCTAAAACATCAAAACCTTTAAATTTGAAATCAACTGCAACTGATGATGATGATCCCTGGGCTGCCATTGCTGCCCCTGCACCCACTACTAAGGCCAAGCCCTTGTCAGCTGGAAGAGGCCGGGGAGCTAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAAACCGGACATCATCTGGGATGTAA 2382 0.4433 MFKFLKEVVGGSGTGLKDLPYNIGEPYPSAWGSWVHCRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETFDAGSPKVTIYIVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNESSAGQMLQYAWLVGSQYKSMELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSGIKLGKTEELRNTASIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFASNDRAIRVGLLQHIDQFGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKHLSKLQVDEEPAIRTNTTILLGNIASHLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEIATRILPNVVVLTIDPDSDVRSKAFQSVDQFLQMAKQYYEKTNAAEPTGGAGTGISSIPGNASLLGWAMSSLTLKGKPSDHAPVASASSNALTPTTSNASSAVDTPSTAPVRVSSTTDFAEHPVPTSPTSTDGWGELENGIDEEPENDKDGWDDLEPLEETKPALANIQAAQRRPVSQPVSQTKQASGLRSKSTPKLNKDGDDDLWGSIAAPAPKTSKPLNLKSTATDDDDPWAAIAAPAPTTKAKPLSAGRGRGAKPAAPKLGAQRINRTSSGM 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00028 793 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 9 772 - -
Sebi213g00028 793 SUPERFAMILY ARM repeat 293 551 IPR016024 -
Sebi213g00028 793 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Sebi213g00028 793 Gene3D - 282 560 IPR011989 -
Sebi213g00028 793 MobiDBLite consensus disorder prediction 689 712 - -
Sebi213g00028 793 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi213g00028 793 SUPERFAMILY Protein kinase-like (PK-like) 36 287 IPR011009 -
Sebi213g00028 793 MobiDBLite consensus disorder prediction 594 674 - -
Sebi213g00028 793 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Sebi213g00028 793 MobiDBLite consensus disorder prediction 655 672 - -
Sebi213g00028 793 Gene3D Transferase(Phosphotransferase) domain 1 110 280 - -
Sebi213g00028 793 MobiDBLite consensus disorder prediction 688 793 - -
Sebi213g00028 793 MobiDBLite consensus disorder prediction 601 652 - -
Sebi213g00028 793 SMART serkin_6 37 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00028 Sebi-Chr213 386817 396566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00028 70 291 MAP Kinase Kinase Kinase AT5G66850 26.778 2.50e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Sebi213g00028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00028 K08876 - gmx:100792884 1386.32