Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00024 ATGGAATCTGGACCTTATCCTCAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGCTGTACTATCTGAAGACTGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAGAGACAAGGCTGGAATTGCTGGAAGAGCTGCTTTAAATATTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGTAAATTTGGGAACACTTGCAAATTCCACCATCCACAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACTGTCAATTCTCCAACTACACCAGGTCAGCAGTCATATACAGGAGGAATTACAAATTGGTCGAGAGCATCTTATGTTCCTACCCCACGCTGGCAAGGCCCGTCAAGTTATACACCTTTAATTCTACCTCATGGAGTGGTTTCCGTGCCCGGATGGAGTGCATACAGTGGCCAAATGGGATCAATATCTACTTCAGACAGTCCACAGCAATCAATGGGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAATTAGAAAATGCTGGATCACATGGGGCATATTCTCAATTCCGTGCTGGCACTATTCCTGTAGGCTTTTATGCATTGCAAAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGGGAGAAATGA 774 0.438 MESGPYPQRPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLYYLKTGTCKFGATCKFHHPRDKAGIAGRAALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVNSPTTPGQQSYTGGITNWSRASYVPTPRWQGPSSYTPLILPHGVVSVPGWSAYSGQMGSISTSDSPQQSMGNGQTYGTSRQGELENAGSHGAYSQFRAGTIPVGFYALQRENIFPERPGQPECQFYMKTGDWEK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00024 257 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Sebi213g00024 257 PANTHER PROTEIN PHOSPHATASE RELATED 2 254 - -
Sebi213g00024 257 ProSiteProfiles Zinc finger C3H1-type profile. 41 61 IPR000571 GO:0046872
Sebi213g00024 257 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Sebi213g00024 257 SMART c3hfinal6 79 106 IPR000571 GO:0046872
Sebi213g00024 257 SMART c3hfinal6 37 60 IPR000571 GO:0046872
Sebi213g00024 257 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 60 IPR000571 GO:0046872
Sebi213g00024 257 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 36 IPR000571 GO:0046872
Sebi213g00024 257 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Sebi213g00024 257 Gene3D - 7 40 - -
Sebi213g00024 257 Gene3D - 41 116 - -
Sebi213g00024 257 MobiDBLite consensus disorder prediction 180 208 - -
Sebi213g00024 257 ProSiteProfiles Zinc finger C3H1-type profile. 79 107 IPR000571 GO:0046872
Sebi213g00024 257 MobiDBLite consensus disorder prediction 180 209 - -
Sebi213g00024 257 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Sebi213g00024 257 SUPERFAMILY CCCH zinc finger 14 37 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00024 Sebi-Chr213 357870 361927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00024 1 254 C2H2 Transcription Factor Family AT3G02830 57.295 3.23e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi213g00024 zf-CCCH 2.8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00024 - - ccaj:109816515 498.049