Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00011 ATGAGGTTACTGATGGGAACTGAGCTTATGAGAATTTGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTTGCACTGAAGAGGGTAGAAGACAATGAGAAACAGAATGATAAAAATATGACCAGTTGTTCAGCCTCTACAAGTGCGTCTGAATCACAGTCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGATACTACAAAGGTTGCTAGATCCCTTCGACGAAGACCATGGATTAACTATGGGCGGTATGAGAACAGTTCAGAGGAAGACTCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTAAGGGAGTCATACGTGGATGTCCAGATTGCAATAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCTCAGGCCAAATCTTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGTCTTGTTCATTTCTTGTGGCACATTTGAATTCACCTTTGTCCTTGTCACTGATATATTTCTACAAGAGTTTCAAGATACTTTGAAATATATATCAAACATTCGCGCCAGTGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGCTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGCTTCAGGTAGAAAGATGTCAAGGATTCAAAGTAATATGAAAAGGAAAAGGAAAAGGTGCACAAAAATGGGAGTGGATAATGGCACTAGAACAGGACCTAATGTGGTATTTTCTGAAGCTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGATGATTTTAAGGTCAAATACTTCAGAAATGAGAATGTATCTCATTTGAGTGCTAATACAACAATTTTAAATGGAACCTCGGAACCTTCTGTGGAGAACATTGAGGGTGAATATTGGCGGATGGTCGAGAATCCAACTGAAGAAATTGAGGTGCTTTACGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGCAAGTTTAGTCATGTCGGTTCTGCTTCACATGAACAGTACATAAAATCTGGCTGGAATTTAAATAATTTTGCAAGGCTGCCTGGATCTCTGCTGTCGCATGAAACCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCTTTTTGTTGGCACGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAGGCAATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCCTCTATTCTTAAGTCTAAAGGAGTACCAGTCTATAGGTGTGTCCAAAACCCTGGGGAATTTGTTTTGACATTTCCTCGAGCCTACCACTCTGGATTCAATTGCGGCTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAAGACTTCCATATCCCATGATAAGCTGTTGCTTGGGGCTGCTAGGGAAGCTGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAAAATACTACTGGTAATCTTCAATGGAAAGATGTTTGTGGAAAGGACGGTCTTCTGGCAAAAGCACTCAAGGTTGTGCTTTTAATGGAATGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAATATACAGATGGGCAAAATTAGATCTTGGGCTGGCACTAACATCTTATGTCTCAGCAGATAAGGAAAAGGTACTTAAGGAGTTGAGATTGCATTCATCCAACTTGTCTCATTCTTCCAGGGCCAATGTGAGTAAAGAGATGGTTTTGCATACATCAAATAAATTTATTGAAGATTCTCAGTTAATAGATGTTCCAATAGAGGATCAAGCAAATTCAACAAATAGCGAAGATATAAGCTATCTTCAACAAAGGAAATCAACAGAAGCTGTGTCTCCTTTGAATCACATGAAGGAATTGTTAACATTCAATAGCTCAAAGCCTACATTGGAGATAGCTAATCACAAGATCTGTGTTAATAAAGAAGAATCTGTTATTTGCAGATCAAAGCTGAGAACATCTGGTTGTCAATTGTCTCAAGAGGATTCATCATATGCTTTATCTCAGCCTCTAGCTCAGCGTGGAGGTGAGAAAAGTTCACTTAACAGACATAACGATATTATACTTCTTAGTGATGATGATGATGAAAAGAAGATGCCAGATTCAAATAGAAGGAAGGAACTTTCTGATATGCTTGCAGGTTCTAGAAATAAAGCAAGCCCATTTAACAATATAGAAAATAACTTGAACCTCACTGTGACAGATGCTGCCGTGATGGGTAAAAAGGACACTATTACATTGCCTCGTGAAGATAACAGTTTGGATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGAACAAAGAGGACCAGTTCAAGCTTCTACACCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTGCAGAATCAGTAAGAAATATTCCAGCTTCTTCAACAGTAGAGACCAGCGATCATCGTTCGGAAAGTTTAGATATTTGTCCTCTGAACCCACAGCATTCTGGAACTATCAAGGTTAAGATTGAGGATAATCATGAAAAGTTTGGAGGATGTACCACTTCAAATGTAGCGGACGGTGCAAGAGCTGTTAATGGAAACATCTCTTGCAGTCTAAATAATTACCGTCACAAAGGTCCTCGTATTGCAAAGGTTGTGCGGCGTATCAACTGCAATGTTGAACCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATATCCAAAGGGTTTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCCAGTATGTGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAATGAGGTCTTCATTCATAAGTCAGCTACAAGATGCTGGGAGCTGGTAAGGGAGAAAGTGAATCAAGAGATCGCAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAACCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATCGAGGCACTGGATCAAAGTCGAGTTTGTAATGAATATTGGGACTCCCGGCCGTACTCCCGGCCTCAAGGGCAGATTTCACAAGCTTACCAACAAACCAATGTAAATGGTGGAAATGGTCAAGGGGCTCTCATGAATCAGCACACGCCCGTTGGGGTTGTTGCAGTACTAAGGAGCCTATTTAAAAAGGTCAATGCAGAAGAATTGAAGTCATTGTACAGCATTCTTAGTGACAATAAGCTAGCGGCTGACCGGATCCTAATTGCGCAACTTCTCAATGAAGAGATTCACAAATCCCAACCGCCCTAG 3636 0.4101 MRLLMGTELMRICVKEDNDDFPSVPPGFESYTSFALKRVEDNEKQNDKNMTSCSASTSASESQSTQVENDVQVRDTTKVARSLRRRPWINYGRYENSSEEDSDCERLDQNFSSRPCLPKGVIRGCPDCNNCQKVVARWRPEDALRPNLEDAPVFYPTEEVLFISCGTFEFTFVLVTDIFLQEFQDTLKYISNIRASAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRASGRKMSRIQSNMKRKRKRCTKMGVDNGTRTGPNVVFSEAERFGFEPGPEFTLETFQRYADDFKVKYFRNENVSHLSANTTILNGTSEPSVENIEGEYWRMVENPTEEIEVLYGADLETGVFGSGFPSKFSHVGSASHEQYIKSGWNLNNFARLPGSLLSHETSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTTGNLQWKDVCGKDGLLAKALKVVLLMECELNILVEALEGKLSAIYRWAKLDLGLALTSYVSADKEKVLKELRLHSSNLSHSSRANVSKEMVLHTSNKFIEDSQLIDVPIEDQANSTNSEDISYLQQRKSTEAVSPLNHMKELLTFNSSKPTLEIANHKICVNKEESVICRSKLRTSGCQLSQEDSSYALSQPLAQRGGEKSSLNRHNDIILLSDDDDEKKMPDSNRRKELSDMLAGSRNKASPFNNIENNLNLTVTDAAVMGKKDTITLPREDNSLDSTQLLHVKQECHEQRGPVQASTPVDLSFHIGLTSAESVRNIPASSTVETSDHRSESLDICPLNPQHSGTIKVKIEDNHEKFGGCTTSNVADGARAVNGNISCSLNNYRHKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIYPKGFRSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCPNEVFIHKSATRCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDQSRVCNEYWDSRPYSRPQGQISQAYQQTNVNGGNGQGALMNQHTPVGVVAVLRSLFKKVNAEELKSLYSILSDNKLAADRILIAQLLNEEIHKSQPP 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00011 1211 Gene3D - 983 1120 - -
Sebi213g00011 1211 SMART cupin_9 384 547 IPR003347 -
Sebi213g00011 1211 SMART JmjN_1 180 213 IPR003349 -
Sebi213g00011 1211 MobiDBLite consensus disorder prediction 791 816 - -
Sebi213g00011 1211 PANTHER LYSINE-SPECIFIC DEMETHYLASE 146 1107 - -
Sebi213g00011 1211 SMART fyrn_3 990 1034 IPR003888 GO:0005634
Sebi213g00011 1211 Pfam F/Y-rich N-terminus 989 1031 IPR003888 GO:0005634
Sebi213g00011 1211 MobiDBLite consensus disorder prediction 774 820 - -
Sebi213g00011 1211 MobiDBLite consensus disorder prediction 48 73 - -
Sebi213g00011 1211 MobiDBLite consensus disorder prediction 43 74 - -
Sebi213g00011 1211 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Sebi213g00011 1211 ProSiteProfiles FYR domain FYRC motif profile. 1036 1126 IPR003889 GO:0005634
Sebi213g00011 1211 ProSiteProfiles JmjC domain profile. 384 547 IPR003347 -
Sebi213g00011 1211 SUPERFAMILY Clavaminate synthase-like 352 574 - -
Sebi213g00011 1211 Pfam jmjN domain 181 207 IPR003349 -
Sebi213g00011 1211 SMART fyrc_3 1040 1134 IPR003889 GO:0005634
Sebi213g00011 1211 Gene3D Cupin 136 531 - -
Sebi213g00011 1211 ProSiteProfiles FYR domain FYRN motif profile. 976 1034 IPR003888 GO:0005634
Sebi213g00011 1211 FunFam Putative lysine-specific demethylase JMJ16 982 1120 - -
Sebi213g00011 1211 Pfam F/Y rich C-terminus 1039 1122 IPR003889 GO:0005634
Sebi213g00011 1211 ProSiteProfiles JmjN domain profile. 173 214 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00011 Sebi-Chr213 114452 123219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00011 5 609 JUMONJI Transcription Factor Family AT1G08620 63.826 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi213g00011 JmjC 1.4e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00011 K11446 - tcc:18600073 1297.34