Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi213g00002 ATGAAAGGGCGATCCCACCGCCCTCAGAGTACGGACCCACCGGACGATTGGGTCGACGGTTCATGGACCGTCGACTGCATTTGCGGCGTGACCTTCGACGACGGCGAAGAGATGGTTAAATGCGACGAGTGCGGCGTTTGGGTTCACACGCGCTGCTCTCGTTATGTCAAGGGAGACGACATGTTCGCCTGTGACAAGTGCAAGAACAAGACCAACGGCCGAGCCGACAACAACACCGAGGAAACCGAGGTTGCTCAATTGCTGGTTGAGCTCCCAACAAAAACCATTTCTTTGGAGAACAACAACAATTCTTTCGCGTCCAAAGTTGCCGCTCGTTCTCGCCGCCCTTTCAAGCTTTGGACCGATATACCCATGGAGGAGAGGGTTCACGTTCAGGGTATCCCTGGTGGTGATCCTTCTCTCTTTGCTGGAAGGACTGTGCCCTCGATTTTCAGTCCCCAATTGTGGAAATGCACCGGTTATGTTCCCAAGAAGTTTAATTTTCAGTACAGGGAGTTTCCCTCTTGGCATGAGAAAGAGGGTGCAGCACAAGAGAATGATAATGGGGCTGGGGTTCTTTTCTCCTTTTCTAAAGAAACCAGTGCTACTGCTGTCTTGGCTTCCCCTGTTGCTGCTCTGGTTGATATGAGATCTAGCCACGGCCGTGAAGGCAAGACGGGTTTCAAGGATATGGGGATGAACAAGTTTGGCGGGGAAGAGGGGACACGTGTCCATAGTGCGATAAAGAAGGAGAGGAGTTTGCTGAGGCCTCTTGTTGTTCATTCCAGTAAGCGCAGGAAAGAGGACTTGGGGAATTCCAATTCCAAAGACCGGGGTGGGAAGAAGCGGGTTAAGATCTCTTCTGACAAAGAGGTAGATCCCAAGAGGAGGAGTTCACATTCTTCTAAACCAGCGTTTACACCCACCAGTGATGCAAAACAGTTGGAATTTTATGAAGACAGAGGTTCGAAGATTTTCAAGGCTGACACTCGGAGCATAAAGAATAAAAACTTAAAGGACATAGTGGTTCAAGAACATGTTTCTAATGATTATTTTGCTGTGGATACCATCGCGGAGGAGCCAAATAACAACTTGACAACTACTGAGGAGTCTTCAGAAGCCTTATATCCTAACATAACAAGACATAGTCTTTCTGTTGGTGATGTATTAGCAGATGAGAAGACTGGCCATAAACTTGTTGAAATGTCTTCTAAGACTGATGATGCTGTTACATCAATTCTAAAACATAATAAAGTTGGAAATGCTTCAGTTAAAGAAAAGGACGGAGATTGCTTGGCTGCTGATAATGTGGATGATACTTTAGTAGTAAGAAGCACTGTGAGTCCTCAGACGGAAGATCATTGTGGTTCTGCACCAGAACTGAAGGAAAACCAAGCATCTCAAGATCTTGACTGTAATCTGCGTCCTAGCTCTGCAAAATGCAAAGTTAAGGTGAAGAAAGAAGATGATGATGATAATTTTAAGAAGCTCTCCAATTTTCATTCTTCACCTATCAGTGATCTTAAAAACAATGAAAAGCCATCTGATCATGCATCTGATATTGTTAAAGTGAATGATGTTGTGGTTCCCAGTTTATCATCACGTGAAAATAAAATGGGCGATGTTGACATATCATCAGAAGTAGTCCTTGATGATCATACCAATAAACCTGATGAATTATTATCTGGTAATTTTTGTCATGGAAAACAAGAAGTGGAGGGGTCTGAAGGTTCATTGGAAACACAAAAGGGGTTTTCAGAAACAAAAGATGGTTCGGATTCTGCTAAGGATCCATCAAAATCTGAAGCACCTGGATGTCCTCATAAGATGCTAGCATGTGTTGGAAAGTCATCTCCAACATCATCAACCATGAACTCCAAATCATTGAGTCATGACTTAAAATCTGAAGATACTGAAATCCCTAATTCTTTTACAAAGCATGGACTGTTGTCTGATTGTAACATTATAAAGAATGAAAGTTGTCCGAGTGATGTTGCAAAGGATGAAATTCCAAGGAAGTCTGTAAGAGACCGACCCAAATCTTCGAATTCCAATTCAAAAGGATTACATTCAAGCAGGAGTGCGCAAATTTCTGTTTCAAAGCAAGTAAATTCAGATGCTAGAGATTCTGTTCATTGTTCGTCATCTAAAGTGTCTCTGGCACATCAGACTGCAAGTACTTTAGGCGCTAGTGAGAGTAATGCATCACTGCATCACCAGAAGGCTTTACAAATGCAGAATAAGGTTACATCTTCAGTGCCACAGAAAGTTGAAAAGCTTAACCAAACAAGCACCCATCCTTCCTCTAAGTTGAACCAGAGTAACGTGCCAACAGTGAATCCTTCTCCAACATCAAATTCTTCAATGCTGAGTGATGAAGAGCTTGCTTTGCTATTGCATCAAGAACTGAATAGTTCACCTCGTGTACCTCGGGTACCCCGTGCACGCCATGCAGGTAGCTTGCCACAGTTAACTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACGTCGGTTGGAGGAAAGGATCACTATTTGGTGTCTAGACGAAAGTACAAGGATGCATCTAGAGATGGGTTTGGCAGTTCTCGTGAGCCTGAAGATGAAGCTAAAAAGATAGAGAAGGAGAAGGGTCCATCCACATCTGATCAGAGAAAACAAGATATGGCGTATGTAGAAGATGCTGCTGCAAAGGAAGAAGGAGAGCGTGCATCTGTGACAGCTGCAATCACAAACAATGTTGTTTCTGCCACCTCTGCCATTGCAAACAGCAGTCCTTCCTCTCCTCCTGATGATCAGAATCTGTCATCAATACGGAACTCACCCAGGAATATATCTGATGATGATACAGCAACTGCTGGAAGGCCAGTTCATCACACCTTACCTGGCTTAATCAATGATATTATGAGCAAGGGCAGGCGTATGACATATGAGGAACTCTGTAATGCTGTGCTACCGCACTGGCACAACTTGAGGAAGCATAATGGAGAGCGTTATGCATACTCGAGTCACTCTCAGGCTGTTCTTGATTGTTTGAGGAATCGGAATGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGGAAAAGGCGTAAGCTGGATGCTGATGAATCTGATGATAATGGATATGGCAAGGGAAGAAATGCAAAAGAGGCTGATGGGAAGAACTTTGAGCTGCAAAAAGAAGAGTTCCCTAAAGGCAAGCGTAAAGCTCGAAAACGCAGGCGGCTTGCTCTTCAGGGAAGAGCAGTAAAGGATGTCAGGAGGAGACAAAAAGCTGACTCGCCAACTGATGAGGATGTTGGTCCGTTCTCCAATTCTAGTGAAGAAAGCATGTTTAGTGAGGATGAAATTCAAGTTGGCAGAATATGTGCAGCAGGAAGTACATCTGATGAGGCAGTGAGCTCAATGTCTCCTGTGTTTGTGAGCTTGTCTGGTGGGGAGTTGGATTGCCGGGGGAAAACAGCCCATGAAATCCCTTTAAATGTGTCCCGCAAGAGAAGGAAAGGCACACTTGGTATCAGGCGAGGAGGACGAATCCAGAGTAGAGAAAGGCATACTTGGCTTCGCAATTTGCACCAAACTCTTCTATCTAGGTTTGATTTGCATCAAATGCAGGTTTGCGTCATACAGAAGCACCAGGATTATGGTGAATCGGCACAGCATGTGCCTCACTTGCCTTGTGGAAACTTCCAAAGAGGTGGAAGCTCTGCGGCAAGAGAAACTTCGTGCTATGAACAAGGAGATGCAGAAGCAGTTGAATCTCGTCCAGGCTTCACTGGAGAATCAATTGGCGGCGGTTCCTCCGGCCAGAATCAAACGACACCGTTTGAATCTTACAAGGGTTTCGTAGCTTCCACATTGGGGATGGGATAA 3888 0.4468 MKGRSHRPQSTDPPDDWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDMFACDKCKNKTNGRADNNTEETEVAQLLVELPTKTISLENNNNSFASKVAARSRRPFKLWTDIPMEERVHVQGIPGGDPSLFAGRTVPSIFSPQLWKCTGYVPKKFNFQYREFPSWHEKEGAAQENDNGAGVLFSFSKETSATAVLASPVAALVDMRSSHGREGKTGFKDMGMNKFGGEEGTRVHSAIKKERSLLRPLVVHSSKRRKEDLGNSNSKDRGGKKRVKISSDKEVDPKRRSSHSSKPAFTPTSDAKQLEFYEDRGSKIFKADTRSIKNKNLKDIVVQEHVSNDYFAVDTIAEEPNNNLTTTEESSEALYPNITRHSLSVGDVLADEKTGHKLVEMSSKTDDAVTSILKHNKVGNASVKEKDGDCLAADNVDDTLVVRSTVSPQTEDHCGSAPELKENQASQDLDCNLRPSSAKCKVKVKKEDDDDNFKKLSNFHSSPISDLKNNEKPSDHASDIVKVNDVVVPSLSSRENKMGDVDISSEVVLDDHTNKPDELLSGNFCHGKQEVEGSEGSLETQKGFSETKDGSDSAKDPSKSEAPGCPHKMLACVGKSSPTSSTMNSKSLSHDLKSEDTEIPNSFTKHGLLSDCNIIKNESCPSDVAKDEIPRKSVRDRPKSSNSNSKGLHSSRSAQISVSKQVNSDARDSVHCSSSKVSLAHQTASTLGASESNASLHHQKALQMQNKVTSSVPQKVEKLNQTSTHPSSKLNQSNVPTVNPSPTSNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLTSASATSMLMKRTSVGGKDHYLVSRRKYKDASRDGFGSSREPEDEAKKIEKEKGPSTSDQRKQDMAYVEDAAAKEEGERASVTAAITNNVVSATSAIANSSPSSPPDDQNLSSIRNSPRNISDDDTATAGRPVHHTLPGLINDIMSKGRRMTYEELCNAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRNEWARLVDRGPKTNSNRKRRKLDADESDDNGYGKGRNAKEADGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKADSPTDEDVGPFSNSSEESMFSEDEIQVGRICAAGSTSDEAVSSMSPVFVSLSGGELDCRGKTAHEIPLNVSRKRRKGTLGIRRGGRIQSRERHTWLRNLHQTLLSRFDLHQMQVCVIQKHQDYGESAQHVPHLPCGNFQRGGSSAARETSCYEQGDAEAVESRPGFTGESIGGGSSGQNQTTPFESYKGFVASTLGMG 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 821 835 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 920 948 - -
Sebi213g00002 1295 SMART PHD_3 25 68 IPR001965 -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 662 680 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 920 963 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 219 239 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 255 300 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 681 711 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 661 711 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 1022 1116 - -
Sebi213g00002 1295 PANTHER UNCHARACTERIZED 1 1132 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 850 888 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 448 468 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 493 519 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 806 836 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 1084 1101 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 1022 1070 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 734 788 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 1266 1281 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 255 314 - -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 554 646 - -
Sebi213g00002 1295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 75 IPR013083 -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 615 629 - -
Sebi213g00002 1295 ProSitePatterns Zinc finger PHD-type signature. 26 67 IPR019786 -
Sebi213g00002 1295 MobiDBLite consensus disorder prediction 1251 1281 - -
Sebi213g00002 1295 SUPERFAMILY FYVE/PHD zinc finger 14 72 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi213g00002 Sebi-Chr213 19214 28638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi213g00002 24 67 PHD Transcription Factor Family AT5G22260 44.681 3.60e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi213g00002 - - gmx:100810855 1589.7