Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi212g00083 ATGGATGCAGACATAGAACAGCAAGAAGAAGAACTTGCCCCCAATCATCCAAACAAGGACTTGGAGGACATGAAGAAGAGGTTGAAGGAGATCGAAGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCCAAGGTTGAGAAAGAGATGGGCGCTGTCCAAGATTCGTCTGGCTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACTATATTGACTGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTGGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTGAAGGTGTCTGCTAAGCGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGAAGACCTACTGGTTTCCGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGGTTGATCGCTTCGTTAACGAACTTAAATGTTCCTGGGCAGTGGGCACTGAAGCCACCACAATTGAAGCCCCAACTCGCAAATGCACACCCATGGCCAAGCCACCACCCCTCCGTGAGTCCAGTGGCACTGCAAAATCACAGCCCTGTGCAGTTGCGTCTCCGTGCGCGCGTGAACCAGCTACCCATTGGCCAACCACCTGTGGCCAAGCCACCACCCAACCCCACCATCCCGCCGTGTATCACTGGATTTACGAAATGCTTATTCGACCCTGCTGTTGTGCGGCCTAACGCCGCAGCTCTCCTCCGACCGCATCACTCTTGA 864 0.4873 MDADIEQQEEELAPNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPTGFRSRRPFMPSPFYPPYGYGLIASLTNLNVPGQWALKPPQLKPQLANAHPWPSHHPSVSPVALQNHSPVQLRLRARVNQLPIGQPPVAKPPPNPTIPPCITGFTKCLFDPAVVRPNAAALLRPHHS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi212g00083 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 141 IPR000504 GO:0003723
Sebi212g00083 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 147 IPR000504 GO:0003723
Sebi212g00083 287 MobiDBLite consensus disorder prediction 1 68 - -
Sebi212g00083 287 Gene3D - 7 144 IPR012677 -
Sebi212g00083 287 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 9 164 - -
Sebi212g00083 287 SUPERFAMILY RNA-binding domain, RBD 61 171 IPR035979 GO:0003676
Sebi212g00083 287 MobiDBLite consensus disorder prediction 9 47 - -
Sebi212g00083 287 Coils Coil 18 48 - -
Sebi212g00083 287 CDD RRM_II_PABPs 72 143 - -
Sebi212g00083 287 SMART rrm1_1 72 143 IPR000504 GO:0003723
Sebi212g00083 287 FunFam Polyadenylate-binding protein 1 65 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi212g00083 Sebi-Chr212 1441587 1448997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi212g00083 72 143 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 1.19e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi212g00083 K14396 - gmx:100527545 348.977