Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi212g00078 ATGGGATGGGGTGTAGCAGAAGAAGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGGTTACTCAATGAGTATGTCAAGTTGCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTACAGGGCTCAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATTCAAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATCAAGAATTATTGGAGGACCCATTTCAAGAAAAAGGCAAAAACCCCTTCTGATGCTGCTGAAAAGGCTAAAATTCGTTCTTTCAGGAAGCAGCAATTTAGACAGCAACAACAGAATTTGATGCAGCAGCAAGTTCAGCAGCAGCAACAACAATTGCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAGATGATTATATAGTTCCTTCTATATCTCAAGAGACACAAGAATTGGTCAGCATGTACCCAAACACACCAGAACAGATGAGCTACTTTATGCTCAATGGTAATGTCTCTGCACCAGAGTATTCCTCAAATGAAGAAATTTTGTGGGATGGGCTGTGGAACTTGGATGATGATGATGTTCTTTGCAATTCAATGCAGTTACTGCTACAAACAAAGCCAGTCTGCACAATTTAG 738 0.4282 MGWGVAEEDGWRKGPWTAEEDRLLNEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKTPSDAAEKAKIRSFRKQQFRQQQQNLMQQQVQQQQQQLQFNLDMKGIINLLEEDDYIVPSISQETQELVSMYPNTPEQMSYFMLNGNVSAPEYSSNEEILWDGLWNLDDDDVLCNSMQLLLQTKPVCTI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi212g00078 245 CDD SANT 70 111 IPR001005 -
Sebi212g00078 245 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Sebi212g00078 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Sebi212g00078 245 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 181 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sebi212g00078 245 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Sebi212g00078 245 Coils Coil 132 152 - -
Sebi212g00078 245 SMART sant 65 113 IPR001005 -
Sebi212g00078 245 SMART sant 12 62 IPR001005 -
Sebi212g00078 245 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Sebi212g00078 245 FunFam MYB-related transcription factor 70 114 - -
Sebi212g00078 245 CDD SANT 15 60 IPR001005 -
Sebi212g00078 245 Gene3D - 70 114 - -
Sebi212g00078 245 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Sebi212g00078 245 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Sebi212g00078 245 FunFam Myb transcription factor 13 65 - -
Sebi212g00078 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Sebi212g00078 245 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi212g00078 Sebi-Chr212 1392291 1393472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi212g00078 8 224 MYB Transcription Factor Family AT3G24310 61.638 1.79e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi212g00078 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi212g00078 K09422 - gmx:100782089 349.362