Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi212g00002 ATGAATTCAAGTGAAGAAATTAGTGATCATGAAACTAGTAGTGCAGGAACAAAACGCTGTTATGAGTGCACATTCTGCAAGAGAGGCTTCACAAATGCTCAAGCTTTAGGGGGTCATATGAATATCCATAGAAAAGACAGAGCCAAGGCCAAGCATAACACACCAAACTCTTCACTTCAAAACAAATTCACAAATGATGAATCCATGGCCCTTCCTTTTGTTTCATCAGAAATTTCAAACCAACCGACCATAAGGCCGCATAATCAACCTGATCAACCTGCACCTGGGCATGCCTTTCAATATGAGTTTCATCATAACCAAAGGTCTCACTCTCACTCTCACCTTATGTATCTCAACCAAGAGCTTCAGGGTGCCAATTTGAGTCTCCGAATTGGTCCAAGTGATCATGTCGATACTCAGAAAGATAATAATGAAGTGGACTTGGAGCTAAGACTTGGTCATGCTCCATAA 471 0.4119 MNSSEEISDHETSSAGTKRCYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHNTPNSSLQNKFTNDESMALPFVSSEISNQPTIRPHNQPDQPAPGHAFQYEFHHNQRSHSHSHLMYLNQELQGANLSLRIGPSDHVDTQKDNNEVDLELRLGHAP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi212g00002 156 Gene3D Classic Zinc Finger 2 77 - -
Sebi212g00002 156 SMART c2h2final6 21 43 IPR013087 -
Sebi212g00002 156 SUPERFAMILY beta-beta-alpha zinc fingers 18 47 IPR036236 -
Sebi212g00002 156 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Sebi212g00002 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 48 IPR013087 -
Sebi212g00002 156 PANTHER OS07G0101800 PROTEIN 13 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi212g00002 Sebi-Chr212 26432 26902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi212g00002 21 153 C2H2 Transcription Factor Family AT5G43540 35.507 1.33e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi212g00002 None None None