Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi211g00107 ATGGCTGGAAAGCCACCACCTCCACCGGAAGAGACCCACCTGAGGGACAGGAGAAGAAGCAACGACATGGTGCACCCATTGGAGACCACAGTTACAGTCTCACACCTACCACCAGGTGCTGCAATCCCAGTTCAATACTACAACGGGGGGGTGAAGCATTACAGGAATTGGTTTGCTTGGTTGATACCATTGTTTGTTGTTGCCAACATCGTCATGTTCATCATCACCATGTATGTCAACAACTGCCCCAAAAACTCATTCTCATGCATTGCCCGCTTCCTTGGTCGTTTCTCCTTTCAGCCTTTCAAAGAAAATCCCCTCCTGGGGCCTTCATCATTGACGCTACAGAAGGTGGGAGCTCTTGATGTGAACAGAGTGGTTCACAGACACCAGGGTTGGCGCCTCATCTCTTGTATGTGGCTACATGGTGGGGTTTTCCATCTAGTGGCAAATATGTTGGGTATTCTCTTCATTGGAATTCGGCTTGAGCAAGAATTTGGGTTTGATCTATTAAGTGTTGACCTGTTGAATGGACTTTGGCCCACTTTTATACAGAGACGTTCATGGAGGGAAGGAGGACCGCCAAAGGTTCAGATCACGGGTATAGACTTCCCACAACCTGGTTTCAGACCTGCAGAGAGAGTTATAGAAACAGGATGCCGGTTGGCAGCTTATGCTGAAGCCTTTAATCTTCCATTTGAATATAATGCCATAGCAAAGAAATGGGAAACAATTCAACTTGAAGAACTCAATATTGATAGGGATGAGTTCCTTGTTGTTACCTCTTGTGAAGGCTATGAAAGAGTAGAGATGCCTGAGACATATAAGCAGTGGCAAACACGTATTCTATGGGCAGGGTTTCTGCAACCACCTTTTGATCATGATACTATGAAGATGGCAATGGAGAAAGCAAGGACTGGCTACTACAAGGATTTTGTAATTGATGATAATAGCCAGTGGTTGTTGCAAGTTGAACTACAGTGCTTGTTGGGCTGCTATTTGTCATATCTGGATTTGGGGGGTAGTTTGCTTTCTGCTCTTTTCATTCAGTCAAATATTTCTGTTGGTGCTTCTGGTGCACTTTTTGGCTTGCTGGGGGGCATGCTTTCAGAACTCATCACTAACTGGTCTATATATGAGAGTAAGGTGGGGGCACTTTTCACCCTTGTGATCATCATTGGTGTCAATCTTGCATTGGGGATTCTCCCACATGTGGACAATTTTGCTCATATTGGAGGCTTTCTTACAGGATTTCTTCTTGGATTTGTGTTTTTCATACGTCCTCAGTTTGGATGGGTAAACCAACGATATGCTCCCCTAGAATATTCTCCAACTCGAGCTAAACGTAAATTCAAGAAATATCAGTGCATATTATGGGTTCTCTCCCTGATCATTCTAATTGTTGGGCTTTCTGTTGGGCTGGTTGCACTTCTCCGTGGTGTTGATGCAAATGATCACTGCTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAAGTGGAGCTGCCATACAGAGGCAGCATATTGTGAGACAACCCAGCTTGGTAACCAGCTAAACGTAACATGTTCAAGCAATGGTAAATCCAATACATACTACATGCAAGATCCAAGTAGTTCCCAGATCCAGCAATTGTGCACTCAGCTTTGCCGTTGA 1656 0.4469 MAGKPPPPPEETHLRDRRRSNDMVHPLETTVTVSHLPPGAAIPVQYYNGGVKHYRNWFAWLIPLFVVANIVMFIITMYVNNCPKNSFSCIARFLGRFSFQPFKENPLLGPSSLTLQKVGALDVNRVVHRHQGWRLISCMWLHGGVFHLVANMLGILFIGIRLEQEFGFDLLSVDLLNGLWPTFIQRRSWREGGPPKVQITGIDFPQPGFRPAERVIETGCRLAAYAEAFNLPFEYNAIAKKWETIQLEELNIDRDEFLVVTSCEGYERVEMPETYKQWQTRILWAGFLQPPFDHDTMKMAMEKARTGYYKDFVIDDNSQWLLQVELQCLLGCYLSYLDLGGSLLSALFIQSNISVGASGALFGLLGGMLSELITNWSIYESKVGALFTLVIIIGVNLALGILPHVDNFAHIGGFLTGFLLGFVFFIRPQFGWVNQRYAPLEYSPTRAKRKFKKYQCILWVLSLIILIVGLSVGLVALLRGVDANDHCSWCHYLSCVPTSKWSCHTEAAYCETTQLGNQLNVTCSSNGKSNTYYMQDPSSSQIQQLCTQLCR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi211g00107 551 Gene3D - 327 427 IPR035952 -
Sebi211g00107 551 MobiDBLite consensus disorder prediction 1 21 - -
Sebi211g00107 551 Pfam GRAS domain family 180 262 IPR005202 -
Sebi211g00107 551 ProSiteProfiles GRAS family profile. 1 348 IPR005202 -
Sebi211g00107 551 SUPERFAMILY Rhomboid-like 339 429 IPR035952 -
Sebi211g00107 551 SUPERFAMILY Rhomboid-like 56 168 IPR035952 -
Sebi211g00107 551 PANTHER RHOMBOID-RELATED 339 503 IPR002610 GO:0004252|GO:0006508|GO:0016020
Sebi211g00107 551 Pfam Rhomboid family 337 427 IPR022764 GO:0004252|GO:0016020
Sebi211g00107 551 Pfam Rhomboid family 127 168 IPR022764 GO:0004252|GO:0016020
Sebi211g00107 551 Gene3D - 58 176 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi211g00107 Sebi-Chr211 1471512 1476975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi211g00107 238 323 GRAS Transcription Factor Family AT2G37650 46.512 2.90e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sebi211g00107 Rhomboid 6e-18 CL0207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi211g00107 - - gmx:100801675 344.739