Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi211g00058 ATGGTGTCAGGTTCAGGGATCTGCGCAAAGAGGGTGGTGGTTGATGCGCGCCACCACATGCTTGGTCGTCTCGCTTCCATTGTAGCGAAGGAGCTTCTCAACGGACAGAAAGTGGTGCTGGTTCGTTGCGAGGAGATTTGCATCTCTGGTGGACTCGTAAGGCAGAAGATGAAGTACATGAGGTTCCTTCGTAAGCGCATGAACACCAAACCCTCCCATGGTCCCATCCACTTCCGTGCCCCTGCCAAGATCTTCTGGCGCACTGTTCGCGGAATGATACCACATAAGACAAAGCGTGGGGAAGCTGCACTTGCTCGATTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAGAATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGCCTGTTGGGCAGATTGTCATCTGAGGTTGGATGGAACTACTATGACACCATCAGGACTTCTAATATGATTCAATCTCATCGAGCTGGAAAGAAGAGAAAGGAAAGGGCACATTTGGTTTACGAGAGAAAGAAGCAGCTCAGCAAATTGAGGGTGAAAGCTGAGAAGGTTGCTGATGAGAAGCTTGGTTCCCAACTTGATGTCCTTGCCCCGGTTAAGTACTGA 645 0.4961 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIRTSNMIQSHRAGKKRKERAHLVYERKKQLSKLRVKAEKVADEKLGSQLDVLAPVKY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi211g00058 214 FunFam 60S ribosomal protein L13a 171 214 - -
Sebi211g00058 214 Gene3D - 170 214 - -
Sebi211g00058 214 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sebi211g00058 214 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Sebi211g00058 214 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sebi211g00058 214 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sebi211g00058 214 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Sebi211g00058 214 PANTHER RIBOSOMAL PROTEIN L13 1 196 IPR005822 GO:0003735|GO:0005840|GO:0006412
Sebi211g00058 214 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Sebi211g00058 214 FunFam 60S ribosomal protein L13a-4 8 154 - -
Sebi211g00058 214 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi211g00058 Sebi-Chr211 755824 757147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi211g00058 1 214 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 85.981 1.31e-136 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi211g00058 K02872 - gmx:100813340 384.8