Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi211g00055 ATGGACCTGAGGGATGCATGGGTTAGCTTCTTTCTGTTTTGTAGTTTCTGGCTTGTCACTTTCTGTGGACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAACTAGTTTCCATGATTCATATAACATTTCATGGCTTCCAGACACCACCTACATAACCAGAGGCAAGACTACAACCATCACATACAATGATGGTTCCTCCTCATTGAATATCTCAGCTCGGTTCTTCCCAAATTCCAGAAGCCGCAGATGTTACAGAATACCAATGAACAATGCAACAACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACCATGATGGACTTGGAAAACCCCCAAGATTTTCTGTTTCTATTGGGACATGTATTGCTGCTACAATAAATCTTGCTGAACATGATCCATGGAGTGAAGAATTACTATGGACAGTGAATAAGGATACACTTCCATTCTGTTTAATTTCAATTCCAAAAGGTGGTTCACCTGTAATTTCTTCCCTTGAAATCCGACCACTTCCTCAAGGAGCCTACACTAGTGGCATTGAAGATTTTCCAAATAAGCTGCTAAAGAAGACTTATCGAATTGATTGTGGATGTACCAATGATTCTATCCGGTATCCCTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAACTTCACACCCTTTCATGTTGCAATTGGGTTTAAGAATCAGCATAGCTTTAATCAGTTAAGCCTTTTGGAGGAACCACCAGCAGCTGTTATTCAAACTGGGAGAGTTTTGGCAAGACGAAATATGCTGACATATAACCTCCCTCTTAGCACATTAGGGGACTACTACATCATCCTCTACTTTGCTGGAATTCTTCCTGTCTTCCCCTCATTTGATGTCTTAATAAATGGAGATCTAGTAAAATCAAACTACACAATAAAGAGCTCAGAAATCAGTGTTTTATATGTTACACAAAAGGGAATCAGCAGCTTGAATATAACACTGAAGAGGATAAGCTTTTACCCTCTGATCAATGCATTTGAGGGATTTGCACAACACATCGCTTTCAGGAATCTGGAAAACAACAAGCTACAAGGTCCACTACCACAGTCTTTGAAGAAAGAAACTTTAGAGATCAGAGCATCTGGGAATTTGTGCCTTACCTTTTCCACAACCAAATGTGATGATGCATCATCCAATCATTCAATTGAGACACCCCAAGTTACTTTGGTTCCTAAGAAGAAGCACAATGTACTTAACCATCTAGCAATAGTTCTAGGCATTGGAGGAGCCACAGTAGCCTTTCTCTTAATGTGTGTTTCAGTATTTATATACAAGACTAAACAGAAATATAAAGTCTCACAGACAGCAAGAGATGAAATGGATATGAGGAATTGGGGTGCAGCAAAAGTCTTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAAGAAGTTATAGGAAGGGGAAGTTTTGGATCTGTTTATCTTGGAAAACTTCCAGATGGAAAATCAGTAGCTATCAAAGTTCGGTTTGATAAATCCCAACTTGGTGCTGATTCTTTTATCAATGAGGTTAACCTTTTGTCAAAAATCCGGCATCAAAATCTTGTGTCATTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTAGTTTATGAGTACTTACCTGGTGGATCCCTGGCTGATCATCTCTATGGTACAATTAGTCAAAAAACTTCCTTAAGCTGGGTTCGAAGGTTGAAAATTGCTGTTGATGCAGCAAAAGCATTGGATTATTTGCACAATGGAAGTGAGCCACGAATCATACACCGTGATATAAAGTGCAGTAATATCCTTTTGGATAGGGATATGAATGCCAAGGTGTGTGACTTAGGTCTCTCTAAGCAAGTAACTCATGCAGATGCAACTCATGTCACAACTATTGTCAAGGGCACTGCAGGGTATCTTGATCCAGAGTATTATTCAACTCAGCAGCTGACAGAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAAATCCTGACTCATTCAATTTGGTGTTATGGGCAAAGCCCTACTTGCAGGCAGGTGCATTTGAGATTGTAGATGAGGACATAAAAGGAACTTTTGATCCCTTGAGCATGAAGAAGGCAACTTTCATTGCTATAAAGTCAGTGGAGAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTAGCAGAGCTAAAAGAAGCCTATAGTATTCAGCTCAGATTCCTTGAATCTTGTCATAATGAGAATTGA 2295 0.3926 MDLRDAWVSFFLFCSFWLVTFCGQDGFLSLSCGGRTSFHDSYNISWLPDTTYITRGKTTTITYNDGSSSLNISARFFPNSRSRRCYRIPMNNATTLVLVRAKFVYKNHDGLGKPPRFSVSIGTCIAATINLAEHDPWSEELLWTVNKDTLPFCLISIPKGGSPVISSLEIRPLPQGAYTSGIEDFPNKLLKKTYRIDCGCTNDSIRYPLDPFDRIWDADRNFTPFHVAIGFKNQHSFNQLSLLEEPPAAVIQTGRVLARRNMLTYNLPLSTLGDYYIILYFAGILPVFPSFDVLINGDLVKSNYTIKSSEISVLYVTQKGISSLNITLKRISFYPLINAFEGFAQHIAFRNLENNKLQGPLPQSLKKETLEIRASGNLCLTFSTTKCDDASSNHSIETPQVTLVPKKKHNVLNHLAIVLGIGGATVAFLLMCVSVFIYKTKQKYKVSQTARDEMDMRNWGAAKVFSYKEIKVATRNFKEVIGRGSFGSVYLGKLPDGKSVAIKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHESKHQILVYEYLPGGSLADHLYGTISQKTSLSWVRRLKIAVDAAKALDYLHNGSEPRIIHRDIKCSNILLDRDMNAKVCDLGLSKQVTHADATHVTTIVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGNPDSFNLVLWAKPYLQAGAFEIVDEDIKGTFDPLSMKKATFIAIKSVERDASQRPSIAEVLAELKEAYSIQLRFLESCHNEN 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi211g00055 764 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524
Sebi211g00055 764 SUPERFAMILY Protein kinase-like (PK-like) 462 749 IPR011009 -
Sebi211g00055 764 CDD STKc_IRAK 481 748 - -
Sebi211g00055 764 Gene3D - 191 344 - -
Sebi211g00055 764 Pfam Malectin-like domain 30 343 IPR024788 -
Sebi211g00055 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672|GO:0006468
Sebi211g00055 764 PANTHER OS07G0107800 PROTEIN-RELATED 351 750 - -
Sebi211g00055 764 FunFam serine/threonine-protein kinase PBS1-like 442 550 - -
Sebi211g00055 764 ProSiteProfiles Protein kinase domain profile. 475 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi211g00055 764 Gene3D Phosphorylase Kinase; domain 1 446 550 - -
Sebi211g00055 764 Gene3D Transferase(Phosphotransferase) domain 1 551 758 - -
Sebi211g00055 764 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 551 757 - -
Sebi211g00055 764 SMART serkin_6 475 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi211g00055 764 Pfam Protein kinase domain 477 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi211g00055 Sebi-Chr211 717280 722798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi211g00055 359 763 Receptor kinase-like Gene Family AT5G48740 70.270 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Sebi211g00055 Malectin_like 1.4e-49 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi211g00055 - - gmx:100812804 749.199