Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi210g00084 ATGAGTGTTGTGTATAGTCATGCTCTCAAGTACTCTGAAGGTGAGGCAATGAGGAACCAAGAAATGGATTCAAGTTTTGGTTTCCCACAACAAAATTGTCACCAGCAAAATTCTGGACTATTGCGGTTACGTTCTGCTCCAAGCTCATTGCTGACAAACCTTGTGGATAACACTAACAGCATTGGCTGTGTCAATTTGGAAGCTTTCAGAAATGAGGATCATCAGCATTATCTTTCTCCAACTTCAGAAATGGAAACCATGTTGGCCAAATTGATTTCATCCAACAATGGGTTGACCAATTCAGAATCTTTGCAAGAGTTTGGAGACAAGCCTGTAGTGAAGCAAGAAGAAATGGACCTTGTTTCACAGGAACCACAACAGAATGGTTACTCTTATGCATCCCCAGATCAGTTAATTTACCAACAACCTCAGCAAATTCAAGGCTTGCCAAATGATTCTTTAGGTGCTGCAGGGAATAATTTTGATAGCTCATTCAATTCAGTGAGTTCCCTGGCTTCAGAGAATTACACACAAACTAAAATGGGTTCTAGCAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATTATTCAGTTGATAATGGTCTTGCATCAATGAGAGAGGTAGGAAGTTTTAGAGGCTCTGATGTCTCAAATGGACAAGCTACTACATCATCTAGTGGATTGCATGGTACCTTGAACTTCTCATCTAGGCCATCCTCTTGCTCCAGCAGAATGCCACAGATTGTTGAGAGTGAACATGAAAGCCTGCAAGCAAATTGTGTTGAAAGTAGGAACCTGGGAAACAGCTTCACCAGTGACTTCTGGGATGGTTCTGCATTCAATGCCCCCAAAACAGCCAGAAACAATGGTGAAATCATGTTTACCACTTCAAATGGTTTGGACACTCAGGATGTAGACTTTGGATATCAAAAACTTGGTTTGAGCCACCATTTGAGTCTGCCTAGCTCTTCTAGGATGCAGAAGCTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCTAAAAGAGGCTTTGCCACTCATCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACTAGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATTTGTTGGATTTTGCAGTTGATTATATTAAAGACCTGCAGAAACAAGTCAAGACACTCACAGAAACTAGGGCAAAGTGCACTTGTACAAGTAAATAG 1269 0.4098 MSVVYSHALKYSEGEAMRNQEMDSSFGFPQQNCHQQNSGLLRLRSAPSSLLTNLVDNTNSIGCVNLEAFRNEDHQHYLSPTSEMETMLAKLISSNNGLTNSESLQEFGDKPVVKQEEMDLVSQEPQQNGYSYASPDQLIYQQPQQIQGLPNDSLGAAGNNFDSSFNSVSSLASENYTQTKMGSSNCSNLIRQKSSPAGFFSNYSVDNGLASMREVGSFRGSDVSNGQATTSSSGLHGTLNFSSRPSSCSSRMPQIVESEHESLQANCVESRNLGNSFTSDFWDGSAFNAPKTARNNGEIMFTTSNGLDTQDVDFGYQKLGLSHHLSLPSSSRMQKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADLLDFAVDYIKDLQKQVKTLTETRAKCTCTSK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi210g00084 422 SMART finulus 359 409 IPR011598 GO:0046983
Sebi210g00084 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 415 IPR036638 GO:0046983
Sebi210g00084 422 Gene3D - 355 420 IPR036638 GO:0046983
Sebi210g00084 422 Pfam Helix-loop-helix DNA-binding domain 359 404 IPR011598 GO:0046983
Sebi210g00084 422 FunFam Transcription factor bHLH130 family 354 422 - -
Sebi210g00084 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 414 - -
Sebi210g00084 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi210g00084 Sebi-Chr210 1279902 1282613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi210g00084 30 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 35.075 1.25e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi210g00084 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi210g00084 - - gmx:100795896 535.798