Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi210g00048 ATGGAGCTTGATTTGAATGAGGAGCCTTTGGATAGAACTCATACTTCAGTATTTGAATTTGATTCTTTATTGAATGAACTAGAATCTGCTGCCCAGGGACATATACAGGACCGTATTAGACACCTTGAAGCAATAACCAACCTTACTGGAGAAGCCGCGGCAACTGTTGCTCAAGGTGAAGGAAGGCAGCACCAACAGGTTGAGGAAGGAGTAGTTGAAAGTGGGAAAGGGGGCAAAAAGGAAGGTGGTGCCCATTTAATAGCTAAAGCTTTGGGGTTGGAAGAAACAGATGCCAGTAAGGCAGGGGGAAGAACTGGAAAGTTTTTTGATTGTAATGTGTGTTTGGACAAGGCAAGAGATCCTGTTTTGACTTGCTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCATATGCTTATTCAGATGCAAAGGAATGCCCTGTTTGTCAAGGAGAGGTTTTGAGAGTTGCTCCTCGACCTCAAGCATCTAGAATTGAGAGTATCAGGCAGAAGCTAATAAACCAACAGGCATCTTCTTCTATGGTCCAAAACATTCAGCGGTTTAGTAACCTTGTTGGTGGACTAGGACAGCCAGTTCAGTCAGAAAGCCCCAATACTGCAACTGATGGAAATGATAGTTTTCTCATTGAATCTTATCCGCAGACAGACAATAATCAACATACTGATTCTCGTCCATTTCAAGCCCTGTTAGAGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCCTTCAATTCTGCAATGGATTCTGCAGAAAGATTTGTTGAGGACCTTGAATCATATGTCCATGGCCAACACATAGGAGGAAGCAGGCGGTCAAATCGTCGTGCTGTTTATAGAAATTCAACTTTTAATGTTGTTGCCGGTATTAACCAGTCAGTGAGTCTTACCCAAGATTTTGCTGCAACTAATTCTGCATCTGCAGCTTATGTGTCTCCTATAAATAGGAATGTTGACACAGTGGCTGTTCTAGGCTCAGGAATCCAGACAACAGATAGTAATATACAGATTAATCCATTAAACCTTCTTCATCTTACAGTAGAAGAGGTACTGGTGTTTCAAGACAGTTTCAAAATCGGCGCAGAAGAAGAAGATAGAGATGATGGTCTTTTATCTTAG 1146 0.4215 MELDLNEEPLDRTHTSVFEFDSLLNELESAAQGHIQDRIRHLEAITNLTGEAAATVAQGEGRQHQQVEEGVVESGKGGKKEGGAHLIAKALGLEETDASKAGGRTGKFFDCNVCLDKARDPVLTCCGHLFCWPCFYQLPYAYSDAKECPVCQGEVLRVAPRPQASRIESIRQKLINQQASSSMVQNIQRFSNLVGGLGQPVQSESPNTATDGNDSFLIESYPQTDNNQHTDSRPFQALLEQGAASFSSLSSAFNSAMDSAERFVEDLESYVHGQHIGGSRRSNRRAVYRNSTFNVVAGINQSVSLTQDFAATNSASAAYVSPINRNVDTVAVLGSGIQTTDSNIQINPLNLLHLTVEEVLVFQDSFKIGAEEEDRDDGLLS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi210g00048 381 ProSiteProfiles Zinc finger RING-type profile. 111 152 IPR001841 -
Sebi210g00048 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 97 156 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sebi210g00048 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 198 IPR013083 -
Sebi210g00048 381 SMART ring_2 111 151 IPR001841 -
Sebi210g00048 381 Pfam zinc-RING finger domain 111 152 IPR001841 -
Sebi210g00048 381 SUPERFAMILY RING/U-box 106 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi210g00048 Sebi-Chr210 764040 765321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi210g00048 54 201 C3H Transcription Factor Family AT3G58030 38.012 9.51e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi210g00048 - - cam:101488454 331.643