Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi210g00020 ATGTCGCTGAACATGAAAACCCTAACCCAAGCATTGGCGAAGACCGCCGCGGTAATTGAGAAGAAAGTGCAGACCACGGTGCAGGAGGTAACAGGACCAAAGCCACTTCAGGACTATGAGCTCATCGACCAGATCGGCTCTGCGGGCCCCGGTCTGGCCTGGAGGCTATACTCAGCCCGGGCCCGTGATCCCTCCCGCCAGCACCAGTATCCGGTTGTCTGCGTCTGGGTATTGGACAAGCGAGTTCTTTCCGAGGCCCGAATGCGTGCCGGGCTCACCAAAGCCGCCGAGGATTCCTTCTTAGATTTGATTCGAACCGATGCCGCTAAGCTCGTACGGCTCAGGCATCCAGGTGTGGTTCATGTCGTTCAGGCCCTTGATGAGAGCAAGAATGCAATGGCAATGGTCACCGAACCCTTGTTTGCTTCTGTTGCTAATACTCTTGGCAATGTGGACAATATTCCAAATGTTCCTAAAGAACTCAGGGGAATGGAAATGGGACTGTTGGAGGTGAAACATGGTTTACTTCAGATAGCTGAATCCCTGGACTTTCTCCATAACCATGCTCATCTTATTCATCGAGCTATATCACCTGAGAATATTTTTATCACCTTGAGTGGAGCCTGGAAACTTGGTGGATTTGGTTTTGCAATTTCTGCTTCTCAGACCCCTGGTGACTCATCTAATCTGCAAGCCTTCCATTATGCTGAATATGACGTTGAAGACTCTATTTTGCCACTTCAGCCATCACTTAATTACACTGCTCCTGAGCTTGTGAGGAGCACCGCATCTTCAGCTGGGTGCCCTTCTGATATTTTCAGTTTTGGATGCCTTGCCTACCATTTAATTGCCCGCAAGCCTTTGTTTGATTGCCACAACAATGTGAAAATGTACATGAATACCTTGACTTACTTATCCAGTGATGCTTTCTCATCTATCCCATCCGAACTGGTTCCTGACTTGCAAAGGATGCTCTCTCCAAATGAGTCTTTCAGGCCAACTGCGATGGATTTTACAGGTTCACCATTTTTTCGGAATGACACTAGATTGCGTGCTTTGCGCTTCCTTGACCACATGCTTGAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTCGATTCCCGTGTATTGCGATACAAGGTCCTACCCCCACTTTGTGCTGAACTTAGGAATGTGGTGATACAACCAATGATTCTACCAATGGTTCTAACCATTGCGGAGTCTCAGGACAAGAATGATTTTGAGCAATCAACACTTCCGGCCCTTGTCCCTGTCTTAACTGCTGCTGCTGGTGAGACACTGTTACTACTTGTGAAGCACACCGACCTTATAGTAAACAAGACTAGTCAAGAGCATTTAATTTCACATGTTCTTCCAATGATTGTGCGGGCCTATGATGATACCGATGCTCGTATACAAGAAGAGGTCCTGAAAAAATCTGTATCCCTTTCCAAGCAACTTGATGCACAGCTGGTGAAGCAAGTGGTTTTGCCCCGTGTTCATGGACTAGCACTTAAAACAACAATTGCTGCGGTTAGAGTCAATGCTTTGCTGTGCCTAGGAGACATGGTTAACCGACTTGATAAACATTCTGTCCTGGATATCTTGCAAACAATTCAGCGGTGTACTGCTGTTGACCGTTCTCCTCCAACCCTTATGTGTACCCTTGGGGTTGCAAATTCTATTTTTAAGCAGTATGGTGTAGAATTTGTGGCTGAGCATGTTCTTCCTTTACTTATGCCCCTCCTGACTGCTCAACAACTGAATGTTCAACAGTTTGCCAAATATATGCTCTTTGTCAAGGATATGCTCCATAAAATAGAAGAGAAGCGAGGAGTGGCTGTGACTGGTTCTGGAATCCCAGAGGCAAAACTATCTTCTGCAGTTAATGGCCTTCAAACCGATGCCTTGAGGACAAGCAGCAACACTGTTGCTACTGCAACAGTTGCTACTGCAACAAAAAGCAACTCCACTTGGGATGAAGATTGGGGGTCCCAAAACAAAGGGAACTGCCTCTTCTATCCACAATTCTATTGA 2064 0.4617 MSLNMKTLTQALAKTAAVIEKKVQTTVQEVTGPKPLQDYELIDQIGSAGPGLAWRLYSARARDPSRQHQYPVVCVWVLDKRVLSEARMRAGLTKAAEDSFLDLIRTDAAKLVRLRHPGVVHVVQALDESKNAMAMVTEPLFASVANTLGNVDNIPNVPKELRGMEMGLLEVKHGLLQIAESLDFLHNHAHLIHRAISPENIFITLSGAWKLGGFGFAISASQTPGDSSNLQAFHYAEYDVEDSILPLQPSLNYTAPELVRSTASSAGCPSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNTLTYLSSDAFSSIPSELVPDLQRMLSPNESFRPTAMDFTGSPFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVIQPMILPMVLTIAESQDKNDFEQSTLPALVPVLTAAAGETLLLLVKHTDLIVNKTSQEHLISHVLPMIVRAYDDTDARIQEEVLKKSVSLSKQLDAQLVKQVVLPRVHGLALKTTIAAVRVNALLCLGDMVNRLDKHSVLDILQTIQRCTAVDRSPPTLMCTLGVANSIFKQYGVEFVAEHVLPLLMPLLTAQQLNVQQFAKYMLFVKDMLHKIEEKRGVAVTGSGIPEAKLSSAVNGLQTDALRTSSNTVATATVATATKSNSTWDEDWGSQNKGNCLFYPQFY 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi210g00020 687 CDD PK_SCY1_like 45 346 - -
Sebi210g00020 687 Pfam Protein kinase domain 104 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi210g00020 687 Gene3D Transferase(Phosphotransferase) domain 1 159 348 - -
Sebi210g00020 687 SMART serkin_6 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi210g00020 687 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Sebi210g00020 687 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi210g00020 687 SUPERFAMILY ARM repeat 333 607 IPR016024 -
Sebi210g00020 687 Gene3D - 349 621 IPR011989 -
Sebi210g00020 687 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 38 678 - -
Sebi210g00020 687 Gene3D Phosphorylase Kinase; domain 1 37 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi210g00020 Sebi-Chr210 310493 321167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi210g00020 92 345 AGC Kinase Gene Family AT3G10540 24.427 5.61e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL2 Sebi210g00020 Pkinase 4.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi210g00020 K17541 - gmx:100796211 1189.48