Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi210g00015 ATGGAATCCTGCAATTGTATTGACCCGCAATGGCCAGCTGATGAATTATTGATGAGATACCAATATATCTCAGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTCTTGAGCTTATCTACTTTGTTAAGAAATCAGCTGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTCACTATTCATACAAGAACTGTGGCAATTGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTATCGTGTGCCACTGCCCTTATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACTAGGGAATTATTTTTGAAGAACAAGGCTGCAGAGCTTGATAGAGAAATGGGCCTGATTCGCACTCAGGAAGAAACTGGTCGACATGTTAGGATGTTGACTCATGAAATTAGAAGCACTCTTGATAGACACACAATTCTGAAAACGACTCTTGTTGAACTGGGCAGAACTTTGGCACTGGAGGAATGTGCCTTATGGATGCCAACACGTACTGGGTTGGAGCTTCAACTCTCTTACACATTGCGACAGCAGAACCCAGTTGGATATACAGTACCCATTAATCTGCCTGTGATCAACCAAGTATTTAGTAGCAACCGTGCAGTAATAATTTCACCGAATTGCCCAGTTGCTAGATTACGACCTCATGCTGGGAAATACATGCCCGGGGCGGTAGTAGCTGTTCGGGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACAAGAAACTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCCAGACAATGGCATGTGCATGAGTTAGAGCTGGTTGAGGTAGTTGCTGATCAGGTAGCTGTTGCTCTTTCGCATGCCGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAACTCATGGAGCAGAATGTTGCACTTGATCTGGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGCAATGACTTCTTGGCGGTTATGAATCACGAGATGAGAACTCCCATGCATGCAATTATTGCACTCTCTTCATTGTTACAGGAAACAGAGCTGACTGCTGAGCAACGTCTGATGGTGGAGACAATATTGAAAAGCAGCAATTTATTGGCTACTCTCATCAATGACGTTTTGGATCTTTCAAGGCTTGAAGATGGCAGTCTTCAACTTGAAGCAGCGAATTTTAACCTTCATTCGTTGTTCAGAGAGGTCCATAACTTGATTAAGCCTGTTGCATCTGTTAAGAAGTTGTCACTCACTCTACAATTAGCATCGGATTTGCCAGTGTACGCCATTGGTGATGAAAAACGTCTCATGCAAACTATGCTGAATATTGTTGGTAATGCTGTGAAGTTCTCAAAAGAGGGCAGCATTTCCATCACAGCTTTTGTTGCAAAGCCTGAATCCTTCAGGGATACTAGAATTCCTGACTTTCTACCAGTGCCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATTAATCCACAAGACATCCCAAAGTTATTCACTAAGTTTGCACAAAACCAGTCATTAGCAACAAGAAATCCTGCTGGAAGTGGACTTGGCCTCGCAATTTGTAAGAGGTTTGTGAATCTCATGGAAGGGAATATTTGGATTGAAAGTGAAGGTATTGGTAAAGGATGTACAGTCACTTTTGTCGTAAAACTTGGAATCCCAGATCGCTCAAATGAATATAAACTACATTTTGCCCCTAAGGCTGCGGTAAATCATGGATCTACAAACTTTGCAGGGCTCAAAGTTCTTCTCATGGATGATAATGGGAACTGTCTCTTGCAGTTATTCCTTATTCTGACTGCTGTAATAATATTATTTCCTGATCATCTAGTTGTTCCTGATGTGAATGTTGGCAGCTTTGCCCAGATCAATACAGTAGCGTGGCGCTTGCCTGTGATAGGCCTCTGTCAGATCCTACTTGACTTGGGGAGAGTATTCAAGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGTGATGTCACAACTGTAAGCTCAAGTGAAGAATGCCTGCGTGTTGTTTCTGCAGAACACAAAGTGGTCTTCATGGATGTTTGTGCAGGGATAGATGGTTATGAACTAGCATTACGAATACAAGAGAAGTTTACAAAACGTCACGATAGACCACTAATAGTTGCTCTTACTGGAAACACTAACAAAGTGACAAAAGAGAACTGTATGAGGGTTGGTATGGATGGTCTTATATTGAAACCTGTTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTGGAGCGTCGAGTTCTATTTGAAACTATTTAA 2397 0.413 MESCNCIDPQWPADELLMRYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFTIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPINLPVINQVFSSNRAVIISPNCPVARLRPHAGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAANFNLHSLFREVHNLIKPVASVKKLSLTLQLASDLPVYAIGDEKRLMQTMLNIVGNAVKFSKEGSISITAFVAKPESFRDTRIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLATRNPAGSGLGLAICKRFVNLMEGNIWIESEGIGKGCTVTFVVKLGIPDRSNEYKLHFAPKAAVNHGSTNFAGLKVLLMDDNGNCLLQLFLILTAVIILFPDHLVVPDVNVGSFAQINTVAWRLPVIGLCQILLDLGRVFKVSRTVTKGLLMHLGCDVTTVSSSEECLRVVSAEHKVVFMDVCAGIDGYELALRIQEKFTKRHDRPLIVALTGNTNKVTKENCMRVGMDGLILKPVSVDKMRGVLSELLERRVLFETI 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi210g00015 798 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 681 791 - -
Sebi210g00015 798 FunFam Ethylene receptor 672 798 - -
Sebi210g00015 798 FunFam Ethylene response sensor 136 308 - -
Sebi210g00015 798 Pfam Response regulator receiver domain 683 782 IPR001789 GO:0000160
Sebi210g00015 798 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Sebi210g00015 798 Gene3D - 681 798 - -
Sebi210g00015 798 FunFam Ethylene receptor 1 310 406 - -
Sebi210g00015 798 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Sebi210g00015 798 ProSiteProfiles Response regulatory domain profile. 673 789 IPR001789 GO:0000160
Sebi210g00015 798 SMART REC_2 677 785 IPR001789 GO:0000160
Sebi210g00015 798 ProSiteProfiles Histidine kinase domain profile. 350 587 IPR005467 -
Sebi210g00015 798 PIRSF Ethylen_sen_hybr_HK 1 628 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Sebi210g00015 798 PIRSF Ethylen_sen_hybr_HK 652 796 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Sebi210g00015 798 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Sebi210g00015 798 FunFam Ethylene receptor 1 408 590 - -
Sebi210g00015 798 SUPERFAMILY GAF domain-like 158 319 - -
Sebi210g00015 798 Gene3D - 309 407 - -
Sebi210g00015 798 SMART gaf_1 158 317 IPR003018 GO:0005515
Sebi210g00015 798 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Sebi210g00015 798 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
Sebi210g00015 798 Gene3D - 136 308 IPR029016 -
Sebi210g00015 798 Gene3D - 408 592 IPR036890 -
Sebi210g00015 798 SUPERFAMILY CheY-like 682 791 IPR011006 -
Sebi210g00015 798 PRINTS Bacterial sensor protein C-terminal signature 546 564 IPR004358 GO:0016310|GO:0016772
Sebi210g00015 798 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Sebi210g00015 798 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Sebi210g00015 798 SMART HKATPase_4 455 587 IPR003594 -
Sebi210g00015 798 Pfam GAF domain 158 307 IPR003018 GO:0005515
Sebi210g00015 798 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 585 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi210g00015 Sebi-Chr210 263993 270525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi210g00015 682 796 Miscellaneous Gene Families AT1G66340 72.650 2.41e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi210g00015 GAF 4.4e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi210g00015 K14509 - cit:102578063 1204.5