Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi210g00002 ATGGCCAACCTTACTAATTCCAATTCGAAGAAGAATGAGTGTGAGTATGACCACGAGAAACCAGAATCCAAATTAGAAGATGAAGAAAGCTTCTCGTATGCTGTGCAACTTGGCAACTCTATTGTGCTTCCCATGGCACTCCAATCTGCAACGGAGCTGGGCGTATTTGACGTCTTGCAAAAGGCAAGTAGAAGCGCTAACCTCTCTTCCAAGGAGATTGCGTCTAAGCTTTCCTGCAATAATCCAGAAGCAGCTGCGATTCGTATTGACCACAAGTTTGATCTCATGTATGCCAAGCGTGCTTTTGTCCACTGGTACGTGGGTGAGGGTATGGCAGAAGGTGAATTTTCTGAAGCTCGTGAGGATCTGGTTAATAAGGACAATGTTGCTTTGATTGTTACCGACACCTTGCATGAGAGAGATGTTCAAGAACTACTTGAAAAATGCCATCCACTGGGCATGTTTGACAGTATTGCTACTCTGGCAGGGATGAATTTTGAAGGCAAACATATTGATGGCCATGATGTTCTGAATTTTTTTGCAGGATGA 549 0.439 MANLTNSNSKKNECEYDHEKPESKLEDEESFSYAVQLGNSIVLPMALQSATELGVFDVLQKASRSANLSSKEIASKLSCNNPEAAAIRIDHKFDLMYAKRAFVHWYVGEGMAEGEFSEAREDLVNKDNVALIVTDTLHERDVQELLEKCHPLGMFDSIATLAGMNFEGKHIDGHDVLNFFAG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi210g00002 182 MobiDBLite consensus disorder prediction 11 25 - -
Sebi210g00002 182 Gene3D - 9 86 IPR036388 -
Sebi210g00002 182 PANTHER TUBULIN 82 123 IPR000217 GO:0005874|GO:0007017
Sebi210g00002 182 MobiDBLite consensus disorder prediction 1 25 - -
Sebi210g00002 182 Pfam Dimerisation domain 45 86 IPR012967 GO:0046983
Sebi210g00002 182 SUPERFAMILY "Winged helix" DNA-binding domain 26 85 IPR036390 -
Sebi210g00002 182 Gene3D Helix hairpin bin 87 127 IPR023123 -
Sebi210g00002 182 SUPERFAMILY Tubulin C-terminal domain-like 88 124 IPR008280 -
Sebi210g00002 182 Coils Coil 177 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi210g00002 Sebi-Chr210 27782 28738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi210g00002 127 162 Primary Pumps ATPases(2) AT3G28710 91.667 3.33e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi210g00002 K07374 - tpra:123922925 88.5817