Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00297 ATGGAAGCGGATTTCGCGACGAATGATATGCTCACGCTCACACAGGACACGTTTGACGCCCTCGATAATGATAATGTAGATATTGAAGGGGAAAGATGTGGAATATGCATGGACGTTGTTATTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCAACCATCACTAATCTATGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGAAGACTCATTCTTCAGAGATGATGACTGGTCCATCGAAGGGAAGAATAACACACTGTCATTTCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGAGATGGCTGCAAAGTTCGAAATGGATTGGCAACTATCCAAGGAGATTCTGGTCTTGATACATCAATTGCATGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGACAGTACATGGTTATGCCCAAGATGTGTGGTTGATGGAGTTTTGAAAGGAACAGATACCAATTCAATAGAGAGGGAAACCGTGGAATGTAATCCAGATAATTGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCTGGAAAAGTGTCTGTGTCTATTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCGATGGTTGACAGAAATAAATCGGTTCCAGCAACAAGTGAGAAAAGCTTTTTGACTCTTGAAGTTGATGGGGATCCACTGATTGAATCATGTAATTCAATGTCAGATACAAATAATCAGCAGCAGGGGACAGAGAATACAACTATGCCGCCAATCATGGAGGGAAACGAGCTGGAGCTGTCGTTATCAAACAACAATATATCCTGTAACCTAACTTCTAAATCCTTCGTGCATAACGATTTAAAGAAAAGTGATAATGGAGCAAGGAATGAACTGAGTAGCTTTGATGGAACCAAGTTATTAGATGAGTCCCATGGCAAAACTAGTCCATCCAGAATTGAATCTGATTTGGGTCTTCATCTCGGTTTGTCAGTGGGCTCTTTTTTATCTCTTGATAATGCGGACAAGAATGAAACAAACGATCAAGCAACGGATATCTTGCGCTTGAGTCCAGAAAAAAATCTTCTGAAAGGAAATGAAATAGAAACCAATGCTTGTAAGGGCAATGCCAGAGTGACTGGTGGGAAGAGGAAGCATGTTGATTACAGTTATGATCAAGTTCATGTAAAAGCTGATGATGGAGATGCCAAGCCTGAACTTTCAGTTGAAGTTTCACAAAAGAAAATTAGAGCATCTGGTAGTCAGATGACTGGTGCTAATGACTCGACTGATGCTCATCTTTCTGACAATGCTAAAAAAAACCCTGCCTTTCTAAAACATTCTCCAAAGAAGGAGATTGTGGCATCTGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTTGCTGACACTAATGCTTGTGACAAGTTAGGTGAAAAGAAAGAAAATATGGCTGGATTGAGAGTGAAAAAGATTATGAAGAGAGTTTCTGATGATGGAGAATCATCCTCAGTAGTTCAAAATTTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGAAAATCATTTTGATGCAAAGCTTCTTGAAGCATTTAGGGCTGCCATAGCAGGGCCAAAAACTGAACCTGTTAACAAGTTATCCCGTTCAGCTCTAAAGGCAAAGAAATCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAGGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAACCTGAAAAGATCGAAACTTTAAAGTCAGTTCTTGATCTACTTAGAAAAAGTTCAGAGAGCCCAGAATCAAAGCAAGATCCTGAATGTCAGGCAAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAAGAGGATTCCGTACTTAAAACTATTGCTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGACCAAATCTATCTCTTGATAACAATACTATTAAAACAACAGAGGTAAATAATCTTTTATCAAAGACCAGAGTTTGTTCATCTGAGAAAAAGGTAGATAAGAAGATTGTACATGGTCCAGCTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCCTCAGCTGGTGCGAAAGTGGGCCTTAAATCTGATTCTGTGAAGACTGATAAAAGAAAATGGGCATTGGAGGTTCTTGCGAGGAGAACAGCTGCTGCAAGCGGGAACACAGCAAATGAAAGTCAGGAAGACAATGCAACTCTCAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCAGTGTTGGCACCTTGTCGTCACAATAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGTCTGACAGAGCGCTTATTGAGGAACACAAATCTGCCAGTCATTCGCAGAACAGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATCTGAACCTTTGTTCACAAGAGCTCTTGCATCACACAAATAACGCAAAATCCAATGTAGCCACAGATACAAGTCGACCAGCCTCATTAGCAGTTCATACTGATCAATCAGAACTAAATACTGATGATCCTTCAACTGACCCTGAAGTCCAAATAGCCCTGAAAAATGCTGGTCTGTTGTCTGATTCACCACCTAGCAGTCCACATAAGAACAAAGAAATATGCAATGATGATATGCCGGGGCCTGATAATATACTTGAAATGGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCTAGTGTTGTGAAGGTCTCAAACCCGAAACAAGAGCAAAGTGAATCAAAAGTGAAACTTGTTTTCTCAACCATGAACTTGAAGAAAACTGATAAAGCTTTGGATGGTGCAGACTGTGAGGGGTCTGAAAACAATGAAGTGCCAGCAGATGCCTCTTGCTCACCAAATTGTCACAATGATGCAGTCTGCACGGATTCTACAATTGATGCTGAGATTGGCCAGCCTTCTGTTTCTTCTGAGCTCCTACCATGCGAGGGAGCTGTTGAGCCAGTCGATTCAGAATTTGAAGAATTATATGGTCCTGATAAGGAACCGCTTATAAAGAATTTTCCAGATGGTGAATCAAGATCATTACATGAAGAGGGCAACACAGAAATTCAAAGCGAGGCCAATGGTTGTCATAATGACAAAAAACATGTCTTGGACAAAGCAGTAAATACTTTGGAATTCAGGAATGAGAATGTCACAGAAAAGGTGTTTGTCTCTACCATCACGGACAAATCTTCTAATATATCTGGGTCTGAAGAAAATTTCCAAAGGAAGGAAGAGAAATCTGACATCCCTGCAAAGCAGACCGACTCTGTAAATCATATAACAAGGAAGGTCGAAGCCTACATTAAGGAACATATCAGGCCACTGTGCAAGAGTGGTGTGATCACGGCTGAACAATACAGGTGGGCTGTTGCAAAAACTACTGATAAGGTTATGAAGTATCATTGCAAATCAAAAAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGGCCGAGCAGAATAGAAAAAATTGA 3855 0.4029 MEADFATNDMLTLTQDTFDALDNDNVDIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEEDSFFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIQGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDGVLKGTDTNSIERETVECNPDNCNSECHAEDSFSGKVSVSIADAGETAVVVSMVDRNKSVPATSEKSFLTLEVDGDPLIESCNSMSDTNNQQQGTENTTMPPIMEGNELELSLSNNNISCNLTSKSFVHNDLKKSDNGARNELSSFDGTKLLDESHGKTSPSRIESDLGLHLGLSVGSFLSLDNADKNETNDQATDILRLSPEKNLLKGNEIETNACKGNARVTGGKRKHVDYSYDQVHVKADDGDAKPELSVEVSQKKIRASGSQMTGANDSTDAHLSDNAKKNPAFLKHSPKKEIVASDIMNIVKGTNRRLSKGLADTNACDKLGEKKENMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVRNKSSINFEENHFDAKLLEAFRAAIAGPKTEPVNKLSRSALKAKKSMLQKGKVREHLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSESPESKQDPECQAKNPILSRLYLADTSVFPRKEDSVLKTIASSEQTKQNNPSGKGPNLSLDNNTIKTTEVNNLLSKTRVCSSEKKVDKKIVHGPAGKVHLSSHSEGTSVSSSAGAKVGLKSDSVKTDKRKWALEVLARRTAAASGNTANESQEDNATLKGNYPLLAQLPTDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHHTNNAKSNVATDTSRPASLAVHTDQSELNTDDPSTDPEVQIALKNAGLLSDSPPSSPHKNKEICNDDMPGPDNILEMDSHPELDIYGDFEYDLEDEDYIGASVVKVSNPKQEQSESKVKLVFSTMNLKKTDKALDGADCEGSENNEVPADASCSPNCHNDAVCTDSTIDAEIGQPSVSSELLPCEGAVEPVDSEFEELYGPDKEPLIKNFPDGESRSLHEEGNTEIQSEANGCHNDKKHVLDKAVNTLEFRNENVTEKVFVSTITDKSSNISGSEENFQRKEEKSDIPAKQTDSVNHITRKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKVMKYHCKSKNANFLIKEGEKVKKLAEQYAEAAQQAEQNRKN 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00297 1284 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Sebi20g00297 1284 MobiDBLite consensus disorder prediction 916 946 - -
Sebi20g00297 1284 MobiDBLite consensus disorder prediction 761 777 - -
Sebi20g00297 1284 Coils Coil 540 560 - -
Sebi20g00297 1284 Coils Coil 1261 1284 - -
Sebi20g00297 1284 PANTHER RING FINGER PROTEIN 41, 151 114 1271 - -
Sebi20g00297 1284 SUPERFAMILY RING/U-box 24 78 - -
Sebi20g00297 1284 MobiDBLite consensus disorder prediction 701 724 - -
Sebi20g00297 1284 SMART ring_2 123 182 IPR001841 -
Sebi20g00297 1284 SMART ring_2 33 71 IPR001841 -
Sebi20g00297 1284 MobiDBLite consensus disorder prediction 750 781 - -
Sebi20g00297 1284 Pfam PHD-finger 148 183 IPR019787 -
Sebi20g00297 1284 SUPERFAMILY FYVE/PHD zinc finger 147 185 IPR011011 -
Sebi20g00297 1284 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Sebi20g00297 1284 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Sebi20g00297 1284 SMART PHD_3 131 183 IPR001965 -
Sebi20g00297 1284 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Sebi20g00297 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Sebi20g00297 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 183 IPR013083 -
Sebi20g00297 1284 MobiDBLite consensus disorder prediction 916 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00297 Sebi-Chr20 3295943 3306349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00297 33 125 C3H Transcription Factor Family AT3G58030 29.000 5.76e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi20g00297 PHD 5.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00297 - - gmx:100808102 1946.4