Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00294 ATGGAGGACGATGAAACCAAAGGAAGAATCGAGGAAACTGTTCGGAGGATTTTGGAAGAATCTGACATGGACAAGGGTGCTTCCAAGGACAAGGAGTTCGATGATGAGGGCGATCTCATCATCTGCAAGCTTTCAGAGAAGAGAAAAGTGACCATCCAGGATTTCAGAGGAAAAACCTTGGTCTCCATTCGGGAGTTTTATAGAAAAGATGGCAAAGAGCTTCCTACTTCCAAAGAAAAGGGGACGGGAAAAAGCGTTCCTTTCTGA 267 0.4494 MEDDETKGRIEETVRRILEESDMDKGASKDKEFDDEGDLIICKLSEKRKVTIQDFRGKTLVSIREFYRKDGKELPTSKEKGTGKSVPF 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00294 88 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 11 79 IPR045125 GO:0003713|GO:0060261
Sebi20g00294 88 Pfam Transcriptional Coactivator p15 (PC4) 42 78 IPR003173 GO:0003677|GO:0006355
Sebi20g00294 88 Gene3D Transcriptional Coactivator Pc4; Chain A 31 84 IPR009044 GO:0003677|GO:0006355
Sebi20g00294 88 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 78 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00294 Sebi-Chr20 3271562 3272247 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Sebi20g00294 PC4 1.2e-13 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00294 K25815 - rcu:8288041 101.293