Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00288 ATGAAGCTAAAAGCAAAGGTTGTTTTATTAAATTTTGCACACAGATGTTGTGTTTGTTTGGGAGAATTTGAGCTGAAAGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAGATTGCATACATAATTGGCTGCAATCAAACTCCACATGTCCACTTTGTAGATGTTCCATCATCCCCACAGCCAAGTTCCTTAATCCTGCACCATCTATTGTTGTACAAGACCCACCACAGCAGGGTAGCATTTCAGGCTCTTCATCACATAGCATATCAATGCCACCTCAACTAGAAGATGAAGCTGGTGCTTCCTCAAATAGTAATACTACCATTTTTCAAGGGAATGATGTATTAATGAGGTAG 369 0.3957 MKLKAKVVLLNFAHRCCVCLGEFELKEELLQIPYCKHVFHIDCIHNWLQSNSTCPLCRCSIIPTAKFLNPAPSIVVQDPPQQGSISGSSSHSISMPPQLEDEAGASSNSNTTIFQGNDVLMR 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00288 122 MobiDBLite consensus disorder prediction 75 122 - -
Sebi20g00288 122 Pfam Ring finger domain 15 58 IPR001841 -
Sebi20g00288 122 PANTHER RING-H2 FINGER PROTEIN ATL16 13 88 IPR044600 GO:0016567|GO:0016740
Sebi20g00288 122 SMART ring_2 16 57 IPR001841 -
Sebi20g00288 122 MobiDBLite consensus disorder prediction 74 122 - -
Sebi20g00288 122 SUPERFAMILY RING/U-box 15 66 - -
Sebi20g00288 122 ProSiteProfiles Zinc finger RING-type profile. 16 58 IPR001841 -
Sebi20g00288 122 CDD RING-H2_EL5-like 15 58 - -
Sebi20g00288 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 63 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00288 Sebi-Chr20 3235256 3235624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00288 15 78 C3H Transcription Factor Family AT1G33480 49.254 7.93e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00288 K19039 - gmx:100806554 158.688