Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00275 ATGGCAGAGGAGTTCTCATTCCACACTCACAAACTGCACCTCTTACATTGGCTATGCTTATTTTATTTCTCACTAACACTTCTCACTGTGACAGGATCACCAACGACCATGTCCATGGATCACGTGAAGCCCTCAACCCCTCTCGTTTCCTTTCTCGAACGCCTCCAAGAAACCGCATTCAAAACCTTCGGCAACTCCAACTTCGACCCCAAAACCTACGTCGACTTGCCCCTCAAGTTCAGCCTCTCCGTCACAGAGCACGCATTCCAGAACCTTCCAAAGGACACTAACGGTTCCGTCCCCGTCGATGACTTGAAACGGTTTCTAGAAGCTTACTTCGAAGGTGCAGGGGATGATCTGGTGTACCTTGAACCAGAGGATTTCGTCCCAGAGCCAGAGGGTTTCTTGCCCAAGGTGAAACACCCTGAGATAAGGGCGTGGGCGCTTCAGGACAAGGCATCAGCTTCCAAGTTCTTGAATGTTTCAGAAAAACAACAATTTTACCTTGACCTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGAGATCCTCCTCATTTCACCACATTGTCTACAACATCAGTGATACCTGTTGATTTAAATGCATATCTACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTACTGGAGATAATAGTACTGCTGAACACTTCATGGAAATTTCTGATGCTAGAAAGAAGGCAATAAACTCTGTTTTCTGGAATTCAAACATGAAACAATGGCTTGATTACTGGCTCGGCAATAGCAAGTCTGAGGAGGTTCATGTTTGGAAAACCCTGCAGCAGAATAAAAATATATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTCACTCAGATACTTCACTTGTGGGTAGTCTTGTTGAAAGTCTCAAAACTTCTGGCCTGCTTCGTGCTGCTGGAGTTGCAACTTCTTTGAGTAATTCAGGACAACAGTGCGGGAAAAGAAGAGGCAAGGTGGGAGAGAGAAGACAGGTAAAATATTTCACTCAATCAGCCTTTGTTAATGACTCTTATCAAACTCACAATAGGGACTTTCCAAATGGTTGGGCCCCACTTCAGCACATGCTAGTTGAAGGTCTGGTAAAATCAGGGTTGGAAGAAGCAAGGTCATTAGCTGAGGAAATTGCCATCAGATGGATCACAACGAATTATATTGTTTACAAGAAAACAGGTGTAATGCATGAAAAGTTTGACGTGGAGCATTGTGGAGAATTTGGAGGTGGGGGTGAATATGTACCCCAGACTGGTTTTGGCTGGTCGAATGGAGTTGTGTTGGCATTCTTGGAGGAGTTTGGATGGCCTCAAGATTGGAATATAAAATGCTGA 1377 0.443 MAEEFSFHTHKLHLLHWLCLFYFSLTLLTVTGSPTTMSMDHVKPSTPLVSFLERLQETAFKTFGNSNFDPKTYVDLPLKFSLSVTEHAFQNLPKDTNGSVPVDDLKRFLEAYFEGAGDDLVYLEPEDFVPEPEGFLPKVKHPEIRAWALQDKASASKFLNVSEKQQFYLDLASAAESGWDFSTRWMRDPPHFTTLSTTSVIPVDLNAYLLGMELNIAFFAKVTGDNSTAEHFMEISDARKKAINSVFWNSNMKQWLDYWLGNSKSEEVHVWKTLQQNKNIFASNFVPLWMKPFHSDTSLVGSLVESLKTSGLLRAAGVATSLSNSGQQCGKRRGKVGERRQVKYFTQSAFVNDSYQTHNRDFPNGWAPLQHMLVEGLVKSGLEEARSLAEEIAIRWITTNYIVYKKTGVMHEKFDVEHCGEFGGGGEYVPQTGFGWSNGVVLAFLEEFGWPQDWNIKC 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00275 458 Gene3D - 138 455 IPR012341 GO:0005975
Sebi20g00275 458 Pfam Trehalase 357 449 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 Pfam Trehalase 67 149 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 Pfam Trehalase 150 328 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 PRINTS Glycosyl hydrolase family 37 signature 200 217 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 PRINTS Glycosyl hydrolase family 37 signature 168 185 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 PRINTS Glycosyl hydrolase family 37 signature 432 445 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 PANTHER TREHALASE 44 150 IPR001661 GO:0004555|GO:0005991
Sebi20g00275 458 SUPERFAMILY Six-hairpin glycosidases 64 451 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00275 Sebi-Chr20 3129279 3134040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00275 151 458 Trehalose Biosynthesis Gene Families AT4G24040 53.571 9.79e-103 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00275 K01194 - gmx:547539 476.092