Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00265 ATGGCACTCAGTGGTGGGTCTTGTTGGATCATATTCTTCTTTCTATTTTGTGTTGTTGTCTCTTCTGGGGCTTCTGACACAGAAGTGCTCCTAAAGGTGAAGGAGAACCTGCAAAACAATAATGCATTATCCTCATGGAACACATCATCCCCTCCTTGTTCAGGTGATCATAACAATTGGCGTGGGGTTCTCTGCAATCAAGGAAAAGTATGGGGCTTGAAGCTTGAGAATATGGGGCTCAAAGGGGTCATTGATGTGGACTCCCTCAAGGAATTACCATATCTTAGAACCATAAGTTTCATGAATAATGATTTGGAAGGTCCATGGCCAGAAATAAACAAGATAGTTGGTCTCAAATCCATTTTCCTTTCAAATAACAAGCTTTCTGGGGAGATCCCTGCAAGAACTTTTGAGGGCATGCAGTGGTTGAAGAAAATCCATTTGTCAAACAACCACTTTACCGGCCTTATTCCACCTTCTCTGGTATTGTTGCCAAGGCTTGTGGAATTAAGGTTGGAGGGAAACAAATTCAATGGCCTCATTCCTCATCTTAGAGAACACCAATTGAAATCATTTAGCGTAGCTAATAATCAGTTGAGGGGCGAAATACCATCCACCCTTAGTAAAATGGCCGTTTCTGCCTTTTCTGGTAATGAAGACTTATGTGGAACCCCATTGGTTTCATGCCATTCCAAGAAGCCCTCAATTGTTAGTATCATTGTGGTTGCGGTCGTTGTTGGTTTGGCAGTGATTGTGATTGCAGCTGTAATAATCATCATCCTTCATCGAAGAAAACAAGGAGCATCAAGTTCAGTGGAAGATCCACCGAGCCTCACCAAACGTGTGAGGGAATCAGGTGATGAAAGTCATAGGTCTTCAAGATCAATGAGCTCCAACCACAGCAGAAGAGGAGACCACATGAAGTTATCTTTCATCAGGGATGATAGGGAGAGGTTTGATTTGCAAGAGTTGCTGAGAGCCTCAGCTGAGATTTTGGGCAGTGGCTGTTTCAGTTCTTCTTACAAGGCTTCTTTGATGAATGGCCCAACAATAGTCGTCAAGAGGTTCAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCAAGAGCACATGAGAAGGATAGGAAGGTTGAGTAGTCCTAATCTGCTTCCTCTTGTGGCTTATTATTATAGAAAGGAGGAAAAGCTCTTGGTTACCGACTATGTTCAGAATGGCAGCCTTGCTGTTCGCCTTCATGGACACCAAGCTCTAGGGGAACCAAGCCTTGATTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAAGGATATGCCAAGCCTAATTGCACCACATGGAAATCTTAAATCCTCTAATGTTCTTCTGACTCAATCTTTTGAGCCCCTCCTCACTGACTATGGATTAGTCCCTGTGACCAACCAGGACATGGCACAGGACATCATGGTGATCTACAAGTCACCTGAATATTTGCAGCATGGAAGAATAACAAAGAAGAGTGATGTGTGGTGTCTTGGAACACTAATTCTGGAGATTCTAACGGGCAAGTTCCCTGCTACCTTTATGCAACAGGGTAAAGGAAGTGAGGTAAGTTTGTCAAATTGGGTCCATTCAATTGTCCCAGAAGAATGGACTAGTGCTGTGTTTGATAAAGATATGGGGGCAACCAAGAACAGTGAGGGAGAGATGGTGAAGCTTTTGAAGATTGCCTTGAGTTGTTGTGAAGGTGATGTGGACAAGAGATGTGATTTGAAAGAAGTAGTAGAGAAAATCCAAGAGGTGAAAGAGAGGGATAATGATGAGGAATTTTATACTTCTTATGCTAGCGAAGCAGACATGAAGCCTTAA 1866 0.4287 MALSGGSCWIIFFFLFCVVVSSGASDTEVLLKVKENLQNNNALSSWNTSSPPCSGDHNNWRGVLCNQGKVWGLKLENMGLKGVIDVDSLKELPYLRTISFMNNDLEGPWPEINKIVGLKSIFLSNNKLSGEIPARTFEGMQWLKKIHLSNNHFTGLIPPSLVLLPRLVELRLEGNKFNGLIPHLREHQLKSFSVANNQLRGEIPSTLSKMAVSAFSGNEDLCGTPLVSCHSKKPSIVSIIVVAVVVGLAVIVIAAVIIIILHRRKQGASSSVEDPPSLTKRVRESGDESHRSSRSMSSNHSRRGDHMKLSFIRDDRERFDLQELLRASAEILGSGCFSSSYKASLMNGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLSSPNLLPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTQSFEPLLTDYGLVPVTNQDMAQDIMVIYKSPEYLQHGRITKKSDVWCLGTLILEILTGKFPATFMQQGKGSEVSLSNWVHSIVPEEWTSAVFDKDMGATKNSEGEMVKLLKIALSCCEGDVDKRCDLKEVVEKIQEVKERDNDEEFYTSYASEADMKP 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00265 621 FunFam pollen receptor-like kinase 1 294 401 - -
Sebi20g00265 621 FunFam Pollen receptor-like kinase 1 402 611 - -
Sebi20g00265 621 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Sebi20g00265 621 Gene3D Ribonuclease Inhibitor 18 112 IPR032675 -
Sebi20g00265 621 Gene3D Ribonuclease Inhibitor 113 236 IPR032675 -
Sebi20g00265 621 Gene3D Phosphorylase Kinase; domain 1 291 401 - -
Sebi20g00265 621 Gene3D Transferase(Phosphotransferase) domain 1 402 613 - -
Sebi20g00265 621 MobiDBLite consensus disorder prediction 277 307 - -
Sebi20g00265 621 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Sebi20g00265 621 SUPERFAMILY L domain-like 50 210 - -
Sebi20g00265 621 MobiDBLite consensus disorder prediction 269 307 - -
Sebi20g00265 621 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 605 IPR046959 -
Sebi20g00265 621 SUPERFAMILY Protein kinase-like (PK-like) 330 601 IPR011009 -
Sebi20g00265 621 ProSiteProfiles Protein kinase domain profile. 326 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi20g00265 621 Pfam Protein tyrosine and serine/threonine kinase 330 597 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00265 Sebi-Chr20 2967577 2970497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00265 10 618 Receptor kinase-like Gene Family AT5G35390 53.125 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi20g00265 PK_Tyr_Ser-Thr 9.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00265 - - gmx:100804368 938.332