Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00260 ATGGAAGGCTATTACAGAACACGGAGAGAAAACGGAGTGACTGTGCCATCATGTTCTTCTTCGCGTGAGGAATTCCACTCTCGCGGTGGAAAAGGACTATTAGGAAAGGCTAATGCTCCTTCATCTTCGAGATACGATATGACTGTAATCGGGAATGGTAAGAAGAAGCAAAAACGTAAATGTCTACAGGAGTTGTTTACAGAAGACTTCATTGTTAGCAATGTGTTACGGAAGGATGGCCCTCCACTTGGTCGGGAATTTGATTCTCTTCCTTATGGACCCAAAAATCACACTTCTGCTTGTCAAGAGGACCAAGGACCCACCAGAAAGAGGAAGGTCCTCTTTCCTCAGGTTTCTACGAGTGCAATTCACAGTCACCCTGATTGTAATATGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACTAATCCTGATGCTGGAGACCTTCCAATCGGTTTTGGTTTTGCTGACCAAGAAGTTCATCAAATCTCTAATTCTATAGCACAGAAACCAGTCCATGAGAACAACAGGTCACGGAAGACAGTTACCTTGAATGGAAAGCCAAAAAATAAAATGCAGAGTAAGAGAAATAAAGTACAGGATAAGAGGAAACTTTTCATGCAAAAAAGAGTGGGGGAGTTGAACCAATATGTGATTCAGGAGCAGTCACCAAAGGAAAAATGCGATCTTGCTTTAGATGGCGCAATACCAGAGGAGGGAGTTGATCGAATTTCAATGTTAATTGATGACGAAGAGCTAGAGTTGAGAGAGTTACAAGAAGGAACCAATCTGCTTGTGTGTTCAGATCATCTTGCTGCCAGTGGAATGCTTGGCTGCTCACTCTGTAAAGATGTGCTAGTTAAGTTCCCCCCAGAAACTGTCAAGATGAAAAAACCTATACGTTTGCAACCTTGGGACTCCTCTCCAGAACTTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTGTAGTTGTTGATATATGTCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCATGACAAGGACTCAATGTTACTAGGAAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTGACATCGAAGTTGAGCTTACGAATGGATTCTCACCTCATTTAAATAAGTCATGCAATTTTCTGGCCTTGCTTCACTCAGTTGAAAGTCGAGAATATTCCCTTGACTTCTGGAGAAGATCTCTAAATGCTCTTACATGGATTGAAATACTTCGTCAAGTACTGGTTGCTTCTGGATTTGGTTCAAAGCAAGGTGCCCTGCGAAGAGAGGCCCTTAGCAAGGAATTGAATCTTCTTGTCAACTATGGCTTATGCCCTGGCACCTTGAAGGGTGAGTTGTTTACAATCTTGTCAGAGCGAGGAAACAATGGATGCAAAGTATCTGACCTGGCAAAGTCAATGCAGATTGCTGAATTAAACCTGGTCAGCACAACAGAGGAACTGGAGTCTTTAATATGTTCAACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGATTGCGTATGAGCACTGTTATGAAGGACAATGATGAATTTCAGTCAGATATGGAGGATTATGGGAGTGTTGATGATGAACTTAACGACACTGATACGTGTAGCAGTGGAGATGATTTTGAAAGTGATTCAATAAACTCCAATATAAGAAAATTGAAGCGCGCAAACAGTCGGAAAATTAAAAATAATATCCTGAAAGTATACACTGAAATAGATGAGAGTCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAAAGTGAATATTCAGATTTGAACATTGAGGAAAAATTGAATGCATTGGTGGCTCTAACAGATCTTGTTTCATCTGGATCCAGCATCAGGATGAAGGATCGAATAAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCTGGAGCAAAAATAAAGAGATCAGTAGTAAAGAAGCCTGGACCATTTTGGAACCAGGTTGGGCAAATGCAATGTGTTACAGAAGTGCACTTGAATTCTCATTCCTGTCCAGTAGATTCTGCGTCATTAATCTCAAAATGCCATAGTCGTGAGGCATCCTTTGATAAAGCAAAAGGATCAACTGATTCACACCCCATTCAGTCAGTGTATTTGGGATCTGATCGTCGGTACAATAGATACTGGCTATTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCATTATGTGCCTTGTTGTCAGTTCTTGATGATAGAGGGAAACGGGAAGCTCTTCTTATTGAATCTTTGGAGAGGCGACAAACATCTCTATGCAGATCTATGTCCAGGATTAAGGTTAACAGTACTGGAATGGGGTGTATGTCACATTCTGATCAATCTGAGCTGGATTCTCCCATATCTGATATAGACAACCTAAACTTGGCTGAGACTGATAAAGACTCTTTGCAGTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGCAGAGGAACAAATACAAAAGTGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGATGACAGCAACACATTTCCAAATCATAAAGTCTTAGCGTCACAGGTTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTCGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTCAAGCGGCTCAGACGCACTTCAACTTTAGTGGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATGAGGGCTGGTTATTCCAATGCAAATTTCCTGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCACACATCATCTGCCCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAAAAGCAGGGAATCGGTAAGCAGGGGTCCTTGGTGATAATAAGGCCTACTGACGTTTATACAAGCCAATTATAA 3276 0.4124 MEGYYRTRRENGVTVPSCSSSREEFHSRGGKGLLGKANAPSSSRYDMTVIGNGKKKQKRKCLQELFTEDFIVSNVLRKDGPPLGREFDSLPYGPKNHTSACQEDQGPTRKRKVLFPQVSTSAIHSHPDCNMKAPVKKHGIGKGLMTVWRATNPDAGDLPIGFGFADQEVHQISNSIAQKPVHENNRSRKTVTLNGKPKNKMQSKRNKVQDKRKLFMQKRVGELNQYVIQEQSPKEKCDLALDGAIPEEGVDRISMLIDDEELELRELQEGTNLLVCSDHLAASGMLGCSLCKDVLVKFPPETVKMKKPIRLQPWDSSPELVKKLFKVFHFIYTYAVVVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESREYSLDFWRRSLNALTWIEILRQVLVASGFGSKQGALRREALSKELNLLVNYGLCPGTLKGELFTILSERGNNGCKVSDLAKSMQIAELNLVSTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVMKDNDEFQSDMEDYGSVDDELNDTDTCSSGDDFESDSINSNIRKLKRANSRKIKNNILKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALVALTDLVSSGSSIRMKDRIKVTADCNSSIQLRGSGAKIKRSVVKKPGPFWNQVGQMQCVTEVHLNSHSCPVDSASLISKCHSREASFDKAKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRIKVNSTGMGCMSHSDQSELDSPISDIDNLNLAETDKDSLQSAGAVVIEAGKKAEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKDDSNTFPNHKVLASQVQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLADFVGAINEGWLFQCKFPDGVVEEIIASFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGIGKQGSLVIIRPTDVYTSQL 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00260 1091 Coils Coil 250 270 - -
Sebi20g00260 1091 MobiDBLite consensus disorder prediction 1 42 - -
Sebi20g00260 1091 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 599 638 IPR028942 -
Sebi20g00260 1091 ProSiteProfiles DDT domain profile. 318 377 IPR018501 -
Sebi20g00260 1091 PANTHER HOMEOBOX PROTEIN SIX 209 1065 - -
Sebi20g00260 1091 MobiDBLite consensus disorder prediction 182 199 - -
Sebi20g00260 1091 MobiDBLite consensus disorder prediction 182 206 - -
Sebi20g00260 1091 SMART testlast3 318 377 IPR018501 -
Sebi20g00260 1091 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 724 797 IPR028941 -
Sebi20g00260 1091 MobiDBLite consensus disorder prediction 87 109 - -
Sebi20g00260 1091 Pfam DDT domain 319 374 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00260 Sebi-Chr20 2909974 2919919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00260 256 1072 Homeobox Transcription Factor Family AT1G28420 26.606 1.71e-75 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sebi20g00260 WSD 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00260 - - gmx:100792062 1751.1