Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi20g00259 ATGGCTGCATCATCACTATCATTTCCTTTCCATTGTTCTCCTACCACCAATGCTCTCCGATCATCCCCAAAATCCACTTTTTTCACTCTCCGTCGCACTTGCGTGTCGTGCAGTGTCAGCGATGGTGCACACAGTCCCCTCCTCAAAGTCAATGACCTTAGGGCTAAAATCGTAGAATCAAACGTCGAGATTCTTCACGGTGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGAAAGAACGGTTCTGGAAAGAGCACTTTCGCCAAGGTTCTTGTTGGACATCCAGATTATGAAGTTACCGGAGGCAGCGTTGTCTTCAAAGGGGAAAATCTGCTTGAGATGGAACCGGAGGAAAGGTCACTTGCAGGTCTTTTCATGAGTTTCCAATCCCCTGTTGAGATTCCTGGTGTTTCTAATGATGAGTTTCTCGTTATGGCCTACAATGCTCGAAGAAAAAAGCTTGGTCTTCCTGAGCTTGGACCACTCGAGTGCTTTTCTTACCTTATGGAGAAGCTCCAACTTGTTAACATGAAGCCTGATTTTCTCAATAGGAATGTCAATGAAGGATTTAGTGGCGGTGAACGCAAACGCAATGAAATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGATGAAATTGATTCTGGATTGGATGTTGATGCGCTCAGGGATGTAGCCAATGCAGTCAATAAGATTCTGACCCCAAAGAATTCTCTGTTGACGATAACTCATTATCGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGGAATGGCTCAGGCTCAGGCTTTGAGTGAAGTGAAGAAAGAAGGAATAGTTTCCCTCTCACAAAGTTTTAAGGAAAATGTGGTTTAG 888 0.4493 MAASSLSFPFHCSPTTNALRSSPKSTFFTLRRTCVSCSVSDGAHSPLLKVNDLRAKIVESNVEILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNKILTPKNSLLTITHYRRILDLLNPTHVHVMGMAQAQALSEVKKEGIVSLSQSFKENVV 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi20g00259 295 CDD ABC_FeS_Assembly 48 267 IPR010230 GO:0005524
Sebi20g00259 295 SMART AAA_5 74 262 IPR003593 GO:0016887
Sebi20g00259 295 Pfam ABC transporter 65 219 IPR003439 GO:0005524
Sebi20g00259 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 259 IPR027417 -
Sebi20g00259 295 Gene3D - 47 284 IPR027417 -
Sebi20g00259 295 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 294 IPR003439 GO:0005524
Sebi20g00259 295 NCBIfam Fe-S cluster assembly ATPase SufC 48 268 IPR010230 GO:0005524
Sebi20g00259 295 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Sebi20g00259 295 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 36 269 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi20g00259 Sebi-Chr20 2904801 2905981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi20g00259 61 251 Calmodulin-binding Proteins AT2G36910 24.876 7.25e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi20g00259 K09013 - gmx:100811883 425.246